Evidence map›Paper›PMID 17062627›Full record

ArticleNucleic acids research2006

Mutagenesis of diploid mammalian genes by gene entrapment.

Qing Lin, Sarah L Donahue, Tracy Moore-Jarrett, Shang Cao, Anna B Osipovich, H Earl Ruley

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Gene trap mutagenesis in the mouse.Methods in enzymology · 2010
    Article
  4. Article
  5. Dyggve-Melchior-Clausen syndrome: chondrodysplasia resulting from defects in intracellular vesicle traffic.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  6. Developmental and adult phenotyping directly from mutant embryonic stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Qing LinDepartment of Microbiology and Immunology, Room AA4206, Medical Center North, Vanderbilt University, School of Medicine 1161 21st Avenue South, AA4210, Nashville, TN 37232-2363, USA.
Sarah L Donahue
Tracy Moore-Jarrett
Shang Cao
Anna B Osipovich
H Earl Ruley
Vanderbilt University Medical Center · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
TISSUE CoreP50CA098131 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO, PIETENPOL, JENNIFER A · 2003 to 2024
$48.7M
T Lymphocyte based functional genomics of inflammationP01HL068744 · NHLBI · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 2002 to 2006
$9.9M
FUNCTIONAL GENOMICS BY TAGGED SEQUENCE MUTAGENESISR01RR013166 · NCRR · VANDERBILT UNIVERSITY · PI RULEY, HENRY EARL · 1998 to 2002
$1.5M
Gene Entrapment Strategy for Proteomics in MiceR01NS043952 · NINDS · VANDERBILT UNIVERSITY · PI RULEY, HENRY EARL · 2001 to 2003
$1.1M
NCI NIH HHS P30 CA068485NCI NIH HHS P30CA68485NCI NIH HHS P50 CA098131NCI NIH HHS P50CA98131NCRR NIH HHS R01 RR013166NCRR NIH HHS R01RR13166NHLBI NIH HHS P01 HL068744NHLBI NIH HHS P01HL68744NINDS NIH HHS R01 NS043952NINDS NIH HHS R01NS43952
6 · The paper itself

Abstract

The present study describes a genome-wide method for biallelic mutagenesis in mammalian cells. Novel poly(A) gene trap vectors, which contain features for direct cloning vector-cell fusion transcripts and for post-entrapment genome engineering, were used to generate a library of 979 mutant ES cells. The entrapment mutations generally disrupted gene expression and were readily transmitted through the germline, establishing the library as a resource for constructing mutant mice. Cells homozygous for most entrapment loci could be isolated by selecting for enhanced expression of an inserted neomycin-resistance gene that resulted from losses of heterozygosity (LOH). The frequencies of LOH measured at 37 sites in the genome ranged from 1.3 x 10(-5) to 1.2 x 10(-4) per cell and increased with increasing distance from the centromere, implicating mitotic recombination in the process. The ease and efficiency of obtaining homozygous mutations will (i) facilitate genetic studies of gene function in cultured cells, (ii) permit genome-wide studies of recombination events that result in LOH and mediate a type of chromosomal instability important in carcinogenesis, and (iii) provide new strategies for phenotype-driven mutagenesis screens in mammalian cells.

Indexed as

MutagenesisAnimalsBase SequenceCell LineDiploidyEmbryonic Stem CellsGene TargetingGenetic VectorsGenomicsLoss of HeterozygosityMiceMolecular Sequence DataSequence Tagged Sites

Identifiers

PMID17062627
PMCPMC1635309
OpenAlexW2162254279

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.