ArticleGenetics2006
Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst].
Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
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Who cites it
80 citing papers in PubMed.
- Teasing apart the joint effect of demography and natural selection in the birth of a contact zone.The New phytologist · 2022Article
- The western redcedar genome reveals low genetic diversity in a self-compatible conifer.Genome research · 2022Article
- Genetic diversity of Norway spruce ecotypes assessed by GBS-derived SNPs.Scientific reports · 2021Article
- Whole-exome sequencing reveals a long-term decline in effective population size of red spruce (Evolutionary applications · 2020Article
- Demography and Natural Selection Have Shaped Genetic Variation in the Widely Distributed Conifer Norway Spruce (Picea abies).Genome biology and evolution · 2020Article
- Linkage disequilibrium vs. pedigree: Genomic selection prediction accuracy in conifer species.PloS one · 2020Article
- Molecular Phylogeography and Evolutionary History of the Endemic SpeciesFrontiers in plant science · 2020Article
- 275 years of forestry meets genomics inEvolutionary applications · 2020Review
- Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees.Evolutionary applications · 2019Article
- Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce.Evolutionary applications · 2019Article
- Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing.Heredity · 2019Article
- Exome Resequencing Reveals Evolutionary History, Genomic Diversity, and Targets of Selection in the Conifers Pinus taeda and Pinus elliottii.Genome biology and evolution · 2019Article
- Genomic prediction accuracy for switchgrass traits related to bioenergy within differentiated populations.BMC plant biology · 2018Article
- Drought Sensitivity of Norway Spruce at the Species' Warmest Fringe: Quantitative and Molecular Analysis Reveals High Genetic Variation Among and Within Provenances.G3 (Bethesda, Md.) · 2018Article
- Adaptive Genetic Divergence Despite Significant Isolation-by-Distance in Populations of Taiwan Cow-Tail Fir (Frontiers in plant science · 2018Article
- Population genomics of the eastern cottonwood (Ecology and evolution · 2017Article
- Association genetics of phenolic needle compounds in Norway spruce with variable susceptibility to needle bladder rust.Plant molecular biology · 2017Article
- Exploiting Wild Relatives for Genomics-assisted Breeding of Perennial Crops.Frontiers in plant science · 2017Review
- Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies.G3 (Bethesda, Md.) · 2016Article
- Late Pleistocene climate change promoted divergence between Picea asperata and P. crassifolia on the Qinghai-Tibet Plateau through recent bottlenecks.Ecology and evolution · 2016Article
20 more citing papers are in PubMed but not listed here.
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DNA polymorphism at 22 loci was studied in an average of 47 Norway spruce [Picea abies (L.) Karst.] haplotypes sampled in seven populations representative of the natural range. The overall nucleotide variation was limited, being lower than that observed in most plant species so far studied. Linkage disequilibrium was also restricted and did not extend beyond a few hundred base pairs. All populations, with the exception of the Romanian population, could be divided into two main domains, a Baltico-Nordic and an Alpine one. Mean Tajima's D and Fay and Wu's H across loci were both negative, indicating the presence of an excess of both rare and high-frequency-derived variants compared to the expected frequency spectrum in a standard neutral model. Multilocus neutrality tests based on D and H led to the rejection of the standard neutral model and exponential growth in the whole population as well as in the two main domains. On the other hand, in all three cases the data are compatible with a severe bottleneck occurring some hundreds of thousands of years ago. Hence, demographic departures from equilibrium expectations and population structure will have to be accounted for when detecting selection at candidate genes and in association mapping studies, respectively.
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