Evidence map›Paper›PMID 17056749›Full record

ArticleJournal of bacteriology2007

Beta-D-Allose inhibits fruiting body formation and sporulation in Myxococcus xanthus.

Marielena Chavira, Nga Cao, Karen Le, Tanveer Riar, Navid Moradshahi, Melinda McBride, Renate Lux, Wenyuan Shi

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Global phenotypic characterization of bacteria.FEMS microbiology reviews · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Marielena ChaviraDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA 90095-1668, USA.
Nga Cao
Karen Le
Tanveer Riar
Navid Moradshahi
Melinda McBride
Renate Lux
Wenyuan Shi
University of California, Los Angeles · US

Funding

INTERCELLULAR SIGNALING IN MYXOCOCCUS XANTHUSR01GM054666 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SHI, WENYUAN · 1996 to 2010
$3.1M
Programmed cell dealth during development of M. xanthusF31GM070396 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHAVIRA, MARIELENA · 2003 to 2006
$108k
NIGMS NIH HHS 5F31GM070396NIGMS NIH HHS F31 GM070396NIGMS NIH HHS GM54666NIGMS NIH HHS R01 GM054666
6 · The paper itself

Abstract

Myxococcus xanthus, a gram-negative soil bacterium, responds to amino acid starvation by entering a process of multicellular development which culminates in the assembly of spore-filled fruiting bodies. Previous studies utilizing developmental inhibitors (such as methionine, lysine, or threonine) have revealed important clues about the mechanisms involved in fruiting body formation. We used Biolog phenotype microarrays to screen 384 chemicals for complete inhibition of fruiting body development in M. xanthus. Here, we report the identification of a novel inhibitor of fruiting body formation and sporulation, beta-d-allose. beta-d-Allose, a rare sugar, is a member of the aldohexose family and a C3 epimer of glucose. Our studies show that beta-d-allose does not affect cell growth, viability, agglutination, or motility. However, beta-galactosidase reporters demonstrate that genes activated between 4 and 14 h of development show significantly lower expression levels in the presence of beta-d-allose. Furthermore, inhibition of fruiting body formation occurs only when beta-d-allose is added to submerged cultures before 12 h of development. In competition studies, high concentrations of galactose and xylose antagonize the nonfruiting response to beta-d-allose, while glucose is capable of partial antagonism. Finally, a magellan-4 transposon mutagenesis screen identified glcK, a putative glucokinase gene, required for beta-d-allose-mediated inhibition of fruiting body formation. Subsequent glucokinase activity assays of the glcK mutant further supported the role of this protein in glucose phosphorylation.

Indexed as

Culture MediaGenes, BacterialGlucokinaseGlucoseMyxococcus xanthusPhosphorylationSpores, BacterialTime FactorsalloseCulture MediaGlucokinaseGlucose

Identifiers

PMID17056749
PMCPMC1797229
OpenAlexW2107142921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.