Evidence map›Paper›PMID 17056736›Full record

ArticleBiophysical journal2007

Competitive displacement of DNA during surface hybridization.

J Bishop, C Wilson, A M Chagovetz, S Blair

Abstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Kinetic mechanisms in morpholino-DNA surface hybridization.Journal of the American Chemical Society · 2011
    Article
  3. Article
  4. Article
  5. Real-time DNA microarray analysis.Nucleic acids research · 2009
    Article
  6. Real-time DNA microarrays: reality check.Biochemical Society transactions · 2009
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Multiplex SNP discrimination.Biophysical journal · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

J Bishop
C Wilson
A M Chagovetz
S Blair

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using real-time dual-color fluorescence detection, we have experimentally tracked individual target species during competitive DNA surface hybridization in a two-component sample. Our experimental results demonstrate displacement of the lower affinity species by the higher affinity species and corroborate recent theoretical models describing competitive DNA surface hybridization. Competition at probe sites complementary to one of the two DNA species was monitored in separate experiments for two different target pairs. Each pair differs in sequence by a single nucleotide polymorphism, and one pair includes a folding target. We propose a mechanistic interpretation of the differences between hybridization curves of targets in multi-component and single-component experiments.

Indexed as

Binding, CompetitiveBiophysicsBiosensing TechniquesDNADNA ProbesHybridization, GeneticNucleic Acid ConformationNucleic Acid HybridizationOligonucleotide ProbesPolymorphism, Single NucleotideTemperatureTime FactorsDNADNA ProbesOligonucleotide Probes

Identifiers

PMID17056736
PMCPMC1697839

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.