Evidence map›Paper›PMID 17056545›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2006

Epigenetic histone modifications do not control Igkappa locus contraction and intranuclear localization in cells with dual B cell-macrophage potential.

Suchita Hodawadekar, Fang Wei, Duonan Yu, Andrei Thomas-Tikhonenko, Michael L Atchison

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Suchita HodawadekarDepartment of Animal Biology and.
Fang Wei
Duonan Yu
Andrei Thomas-Tikhonenko
Michael L Atchison

Funding

DEVELOPMENTAL CONTROL OF IMMUNOGLOBULIN TRANSCRIPTIONR01GM042415 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL L. · 1989 to 2005
$1.7M
Interplay between Pax5 and Myc in B-lymphomagenesisR01CA102709 · NCI · UNIVERSITY OF PENNSYLVANIA · PI THOMAS-TIKHONENKO, ANDREI · 2003 to 2006
$1.2M
NCI NIH HHS CA 102709NCI NIH HHS R01 CA102709NIGMS NIH HHS GM 42415NIGMS NIH HHS R01 GM042415
6 · The paper itself

Abstract

Somatic rearrangement of the Ig genes during B cell development is believed to be controlled, at least in part, by accessibility of the loci to the recombinational machinery. Accessibility is poorly understood, but appears to be controlled by a combination of histone posttranslational modifications, large scale Ig locus contractions, and changes in intranuclear localization of the loci. These changes are regulated by developmental stage-specific as well as tissue-specific mechanisms. We previously isolated a murine B cell lymphoma line, Myc5, that can oscillate between the B cell and macrophage lineages depending upon growth conditions. This line provides an opportunity to study tissue-specific regulation of epigenetic mechanisms operating on the Ig loci. We found that when Myc5 cells are induced to differentiate from B cells into macrophages, expression of macrophage-specific transcripts was induced (M-CSFR, F4/80, and CD14), whereas B cell-specific transcripts decreased dramatically (mb-1, E47, IRF4, Pax5, and Igkappa). Loss of Igkappa transcription was associated with reduced Igkappa locus contraction, as well as increased association with heterochromatin protein-1 and association of the Igkappa locus with the nuclear periphery. Surprisingly, however, we found that histone modifications at the Igkappa locus remained largely unchanged whether the cells were grown in vivo as B cells, or in vitro as macrophages. These results mechanistically uncouple histone modifications at the Igkappa locus from changes in locus contraction and intranuclear localization.

Indexed as

Epigenesis, GeneticAllelesAnimalsB-LymphocytesCell DifferentiationCell Line, TumorCell NucleusChromatin ImmunoprecipitationDNAHistonesImmunoglobulin kappa-ChainsIn Situ Hybridization, FluorescenceLocus Control RegionMacrophagesMiceTranscription, GeneticDNAHistonesImmunoglobulin kappa-Chains

Identifiers

PMID17056545
PMCPMC1635549

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.