Evidence map›Paper›PMID 17056240›Full record

ArticleMatrix biology : journal of the International Society for Matrix Biology2007

Genomic structure and embryonic expression of zebrafish lysyl hydroxylase 1 and lysyl hydroxylase 2.

Valerie A Schneider, Michael Granato

Open access · greenAbstract read
In one paragraph

Article in Matrix biology : journal of the International Society for Matrix Biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Valerie A SchneiderUniversity of Pennsylvania School of Medicine, Department of Cell and Developmental Biology, Philadelphia, PA 19104-6058, USA.
Michael Granato
University of Pennsylvania · US

Funding

AXONAL PATHWAY SELECTION IN THE ZEBRAFISH EMBRYOR01HD037975 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI GRANATO, MICHAEL · 1999 to 2014
$4.5M
NICHD NIH HHS R01 HD037975
6 · The paper itself

Abstract

Collagen biosynthesis in both invertebrates and vertebrates is critically dependent upon the activity of lysyl hydroxylase (LH) enzymes. In humans, mutations in the genes encoding LH1 and LH2 have been shown to cause two distinct connective tissue disorders, Ehlers-Danlos (Type VIA) and Bruck syndromes. While the biochemical properties of these enzymes have been intensively studied, their embryonic patterns of expression and developmental roles remain unknown. We now present the cloning and analyses of the genes encoding LH1 and LH2 in the zebrafish, Danio rerio. We find these genes to be similarly organized to other vertebrate lh (plod) genes, including the presence of an alternatively spliced exon in lh2. We also examine the mRNA expression patterns of lh1 and lh2 during embryogenesis and find them to exhibit unique and dynamic patterns of expression. These results strongly suggest that LH enzymes are not merely housekeeping enzymes, but play distinct developmental roles. The identification of these genes in the zebrafish, a genetic model organism whose development is well characterized, now provides the basis for the establishment of the first animal models for both Ehlers-Danlos (Type VIA) and Bruck syndromes.

Indexed as

Amino Acid SequenceAnimalsCloning, MolecularEmbryo, NonmammalianExonsGastrulaGene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicIsoenzymesMesodermMolecular Sequence DataNotochordProcollagen-Lysine, 2-Oxoglutarate 5-DioxygenaseSequence Homology, Amino AcidSomitesZebrafishIsoenzymeslysyl hydroxylase 1, zebrafishlysyl hydroxylase 2, zebrafishProcollagen-Lysine, 2-Oxoglutarate 5-DioxygenaseZebrafish Proteins

Identifiers

PMID17056240
PMCPMC1828209
OpenAlexW2050327780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.