Evidence map›Paper›PMID 17054795›Full record

ArticleRetrovirology2006

Characterization of HIV-1 subtype C envelope glycoproteins from perinatally infected children with different courses of disease.

Hong Zhang, Federico Hoffmann, Jun He, Xiang He, Chipepo Kankasa, John T West, Charles D Mitchell, Ruth M Ruprecht, Guillermo Orti, Charles Wood

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 54 citations in OpenAlex.

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  9. Analysis of primary resistance mutations to HIV-1 entry inhibitors in therapy naive subtype C HIV-1 infected mother-infant pairs from Zambia.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Hong ZhangNebraska Center for Virology, University of Nebraska, Lincoln, NE, USA. hongz@unlserve.unl.edu
Federico Hoffmann
Jun He
Xiang He
Chipepo Kankasa
John T West
Charles D Mitchell
Ruth M Ruprecht
Guillermo Orti
Charles Wood
University of Nebraska–Lincoln · USHarvard University · USUniversity of Miami · USUniversity Teaching Hospital · ZM

Funding

Virology and ImmunologyP01AI048240 · NIAID · UNIVERSITY OF WASHINGTON · PI RUPRECHT, RUTH MARGRIT · 2000 to 2020
$46.7M
VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
Supplement: Fogarty Training in HIV- and AIDS Associated Diseases/MalignanciesD43TW001429 · FIC · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2015
$7.2M
Evolution of Clade C HIV-1 in Infected ChildrenR01HD039620 · NICHD · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2001 to 2005
$1.6M
INTERACTIONS BETWEEN HIV AND KSHVR01CA076958 · NCI · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 1998 to 2001
$434k
FIC NIH HHS D43 TW001429FIC NIH HHS TW01429NCI NIH HHS CA76958NCRR NIH HHS P20 RR015635NCRR NIH HHS RR15635NIAID NIH HHS P01 AI048240NIAID NIH HHS P01 AI 48240NICHD NIH HHS HD39620NICHD NIH HHS R01 HD039620
6 · The paper itself

Abstract

backgroundThe causal mechanisms of differential disease progression in HIV-1 infected children remain poorly defined, and much of the accumulated knowledge comes from studies of subtype B infected individuals. The applicability of such findings to other subtypes, such as subtype C, remains to be substantiated. In this study, we longitudinally characterized the evolution of the Env V1-V5 region from seven subtype C HIV-1 perinatally infected children with different clinical outcomes. We investigated the possible influence of viral genotype and humoral immune response on disease progression in infants.

resultsGenetic analyses revealed that rapid progressors (infants that died in the first year of life) received and maintained a genetically homogeneous viral population throughout the disease course. In contrast, slow progressors (infants that remained clinically asymptomatic for up to four years) also exhibited low levels variation initially, but attained higher levels of diversity over time. Genetic assessment of variation, as indicated by dN/dS, showed that particular regions of Env undergo selective changes. Nevertheless, the magnitude and distribution of these changes did not segregate slow and rapid progressors. Longitudinal trends in Env V1-V5 length and the number of potential N-glycosylation sites varied among patients but also failed to discriminate between fast and slow progressors. Viral isolates from rapid progressors and slow progressors displayed no significant growth properties differences in vitro. The neutralizing activity in maternal and infant baseline plasma also varied in its effectiveness against the initial virus from the infants but did not differentiate rapid from slow progressors. Quantification of the neutralization susceptibility of the initial infant viral isolates to maternal baseline plasma indicated that both sensitive and resistant viruses were transmitted, irrespective of disease course. We showed that humoral immunity, whether passively acquired or developed de novo in the infected children, varied but was not predictive of disease progression.

conclusionOur data suggest that neither genetic variation in env, or initial maternal neutralizing activity, or the level of passively acquired neutralizing antibody, or the level of the de novo neutralization response appear to be linked to differences in disease progression in subtype C HIV-1 infected children.

Indexed as

Genetic VariationAmino Acid SubstitutionChild, PreschoolDisease ProgressionFemaleGene Products, envGlycosylationHIV-1HIV AntibodiesHIV InfectionsHumansInfantInfant, NewbornLongitudinal StudiesMothersProtein Structure, SecondaryGene Products, envHIV AntibodiesReceptors, HIV

Identifiers

PMID17054795
PMCPMC1635063
OpenAlexW2131328336

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.