Evidence map›Paper›PMID 17052357›Full record

ArticleBMC genomics2006

Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat.

Wayne Crismani, Ute Baumann, Tim Sutton, Neil Shirley, Tracie Webster, German Spangenberg, Peter Langridge, Jason A Able

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 81 citations in OpenAlex.

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  7. Profiling of indole metabolic pathway in thermo-sensitive Bainong male sterile line in wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2019
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  8. Review
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  10. Validation of reference genes for accurate normalization of gene expression with quantitative real-time PCR inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2018
    Article
  11. Article
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  15. Review
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  18. Article
  19. The meiotic transcriptome architecture of plants.Frontiers in plant science · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Wayne CrismaniMolecular Plant Breeding Cooperative Research Centre, School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, PMB1, Glen Osmond, South Australia, 5064, Australia. wayne.crismani@adelaide.edu.au <wayne.crismani@adelaide.edu.au>
Ute Baumann
Tim Sutton
Neil Shirley
Tracie Webster
German Spangenberg
Peter Langridge
Jason A Able
Australian Centre for Plant Functional Genomics · AUUniversity of Adelaide · AUAgriBio · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOur understanding of the mechanisms that govern the cellular process of meiosis is limited in higher plants with polyploid genomes. Bread wheat is an allohexaploid that behaves as a diploid during meiosis. Chromosome pairing is restricted to homologous chromosomes despite the presence of homoeologues in the nucleus. The importance of wheat as a crop and the extensive use of wild wheat relatives in breeding programs has prompted many years of cytogenetic and genetic research to develop an understanding of the control of chromosome pairing and recombination. The rapid advance of biochemical and molecular information on meiosis in model organisms such as yeast provides new opportunities to investigate the molecular basis of chromosome pairing control in wheat. However, building the link between the model and wheat requires points of data contact.

resultsWe report here a large-scale transcriptomics study using the Affymetrix wheat GeneChip(R) aimed at providing this link between wheat and model systems and at identifying early meiotic genes. Analysis of the microarray data identified 1,350 transcripts temporally-regulated during the early stages of meiosis. Expression profiles with annotated transcript functions including chromatin condensation, synaptonemal complex formation, recombination and fertility were identified. From the 1,350 transcripts, 30 displayed at least an eight-fold expression change between and including pre-meiosis and telophase II, with more than 50% of these having no similarities to known sequences in NCBI and TIGR databases.

conclusionThis resource is now available to support research into the molecular basis of pairing and recombination control in the complex polyploid, wheat.

Indexed as

Gene Expression Regulation, PlantOligonucleotide Array Sequence AnalysisChromosome PairingDNA, ComplementaryDNA, PlantFertilityGenes, PlantGenome, PlantMeiosisPolymerase Chain ReactionPolyploidyRecombination, GeneticRNA, PlantTranscription, GeneticTriticumDNA, ComplementaryDNA, PlantRNA, Plant

Identifiers

PMID17052357
PMCPMC1647286
OpenAlexW2116585244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.