ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006
Associations between DNA markers and resistance to diseases in sugarcane and effects of population substructure.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- Unveiling the predominance of Saccharum spontaneum alleles for resistance to orange rust in sugarcane using genome-wide association.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- A Genome-Wide Association Study and Genomic Prediction for Fiber and Sucrose Contents in a Mapping Population of LCP 85-384 Sugarcane.Plants (Basel, Switzerland) · 2023Article
- Validation of candidate gene-based EST-SSR markers for sugar yield in sugarcane.Frontiers in plant science · 2023Article
- Identification of potential MTAs and candidate genes for juice quality- and yield-related traits in Saccharum clones: a genome-wide association and comparative genomic study.Molecular genetics and genomics : MGG · 2022Article
- Combining genomic selection with genome-wide association analysis identified a large-effect QTL and improved selection for red rot resistance in sugarcane.Frontiers in plant science · 2022Article
- Review
- Applying Molecular Phenotyping Tools to Explore Sugarcane Carbon Potential.Frontiers in plant science · 2021Review
- Quantitative Trait Loci Mapping and Development of KASP Marker Smut Screening Assay Using High-Density Genetic Map and Bulked Segregant RNA Sequencing in Sugarcane (Frontiers in plant science · 2021Article
- A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding.G3 (Bethesda, Md.) · 2020Article
- Genome-wide association study of multiple yield traits in a diversity panel of polyploid sugarcane (Saccharum spp.).The plant genome · 2020Article
- A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.).PloS one · 2019Article
- A mosaic monoploid reference sequence for the highly complex genome of sugarcane.Nature communications · 2018Article
- Identifying Quantitative Trait Loci (QTLs) and Developing Diagnostic Markers Linked to Orange Rust Resistance in Sugarcane (Frontiers in plant science · 2018Article
- Article
- Identification ofG3 (Bethesda, Md.) · 2017Article
- GBS-based single dosage markers for linkage and QTL mapping allow gene mining for yield-related traits in sugarcane.BMC genomics · 2017Article
- Identification of marker-trait associations for morphological descriptors and yield component traits in sugarcane.Physiology and molecular biology of plants : an international journal of functional plant biology · 2017Article
- Genome-wide association mapping of quantitative traits in a breeding population of sugarcane.BMC plant biology · 2016Article
- Identification of putative candidate genes for red rot resistance in sugarcane (Saccharum species hybrid) using LD-based association mapping.Molecular genetics and genomics : MGG · 2016Article
- Strigolactone pathway genes and plant architecture: association analysis and QTL detection for horticultural traits in chrysanthemum.Molecular genetics and genomics : MGG · 2016Article
Corrections and comments
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Authors and funding
5 authors.
Funding
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Abstract
Association between markers and sugarcane diseases were investigated in a collection of 154 sugarcane clones, consisting of important ancestors or parents, and cultivars. 1,068 polymorphic AFLP and 141 SRR markers were scored across all clones. Data on the four most important diseases in the Australian sugarcane industry were obtained; these diseases being pachymetra root rot (Pachymetra chaunorhiza B.J. Croft & M.W. Dick), leaf scald (Xanthomonas albilineans Dowson), Fiji leaf gall (Fiji disease virus), and smut (Ustilago scitaminea H. & P. Sydow). By a simple regression analysis, association between markers and diseases could be readily detected. However, many of these associations were due to the effects of embedded population structure and random effects. After taking population structure into account, we found that 59% of the phenotypic variation in smut resistance ratings could be accounted for by 11 markers, 32% of variation for leaf scald and pachymetra root rot rating by 4 markers, and 26% of Fiji leaf gall by 5 markers. The results suggest that marker-trait associations can be readily detected in populations generated from modern sugarcane breeding programs. This may be due to special features of past sugarcane breeding programs leading to persistent linkage disequilibrium in modern parental populations.
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