Evidence map›Paper›PMID 17043893›Full record

ArticleMolecular genetics and genomics : MGG2007

The jmjN and jmjC domains of the yeast zinc finger protein Gis1 interact with 19 proteins involved in transcription, sumoylation and DNA repair.

Susanna Tronnersjö, Christine Hanefalk, Darius Balciunas, Guo-Zhen Hu, Niklas Nordberg, Eva Murén, Hans Ronne

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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  14. The RecQ DNA helicases in DNA repair.Annual review of genetics · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Susanna TronnersjöDepartment of Plant Biology and Forest Genetics, Swedish University of Agricultural Sciences, P.O. Box 7080, 75007, Uppsala, Sweden.
Christine Hanefalk
Darius Balciunas
Guo-Zhen Hu
Niklas Nordberg
Eva Murén
Hans Ronne
Swedish University of Agricultural Sciences · SEUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The jumonji domain is a highly conserved bipartite domain made up of two subdomains, jmjN and jmjC, which is found in many eukaryotic transcription factors. The jmjC domain was recently shown to possess the histone demethylase activity. Here we show that the jmjN and jmjC domains of the yeast zinc finger protein Gis1 interact in a two-hybrid system with 19 yeast proteins that include the RecQ helicase Sgs1, the silencing factors Esc1 and Sir4, the URI-type prefoldin Bud27 and the PIAS type SUMO ligase Nfi1/Siz2. Extensive interaction cross dependencies further suggest that the proteins form a larger complex. Consistent with this, 16 of the proteins also interact with a Bud27 two-hybrid bait, and three of them co-precipitate with TAP-tagged Gis1. The Gis1 jumonji domain can repress transcription when recruited to a promoter as a lexA fusion. This effect is dependent on both the jmjN and jmjC subdomains, as were all 19 two-hybrid interactions, indicating that the two subdomains form a single functional unit. The human Sgs1 homolog WRN also interacts with the Gis1 jumonji domain. Finally, we note that several jumonji domain interactors are related to proteins that are found in mammalian PML nuclear bodies.

Indexed as

Protein Processing, Post-TranslationalTranscription, GeneticExodeoxyribonucleasesHumansMolecular ChaperonesNuclear ProteinsProtein BindingProtein Structure, TertiaryRecQ HelicasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSmall Ubiquitin-Related Modifier ProteinsTwo-Hybrid System TechniquesWerner Syndrome HelicaseEsc1 protein, S cerevisiaeExodeoxyribonucleasesMolecular ChaperonesNuclear ProteinsprefoldinRecQ HelicasesSaccharomyces cerevisiae ProteinsSGS1 protein, S cerevisiaeSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR4 protein, S cerevisiaeSiz2 protein, S cerevisiaeSmall Ubiquitin-Related Modifier ProteinsWerner Syndrome HelicaseWRN protein, human

Identifiers

PMID17043893
OpenAlexW2058999897

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.