Evidence map›Paper›PMID 17043638›Full record

ArticleOncogene2007

The immunoglobulin heavy-chain gene 3' enhancers deregulate bcl-2 promoter usage in t(14;18) lymphoma cells.

H Duan, C A Heckman, L M Boxer

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  7. Review
  8. Oncogenic Myc translocations are independent of chromosomal location and orientation of the immunoglobulin heavy chain locus.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

H DuanVeterans Affairs Palo Alto Health Care System and the Department of Medicine, Center for Molecular Biology in Medicine, Stanford University School of Medicine, Stanford, CA, USA.
C A Heckman
L M Boxer
VA Palo Alto Health Care System · US

Funding

ACTIVATION OF BCL-2 IN HEMATOLOGIC MALIGNANCIESR01CA056764 · NCI · STANFORD UNIVERSITY · PI BOXER, LINDA M · 1993 to 2012
$3.3M
Activation of BCL-2 in Hematologic MalgnanciesR56CA056764 · NCI · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI BOXER, LINDA M · 2007 to 2007
$295k
NCI NIH HHS CA56764
6 · The paper itself

Abstract

In t(14;18) lymphomas, bcl-2 is juxtaposed to the immunoglobulin heavy-chain gene (IgH), resulting in increased bcl-2 transcription and resistance to apoptosis. Regulatory elements of both the bcl-2 promoter and the IgH enhancers are believed to play a role in the increased expression of bcl-2 in t(14;18) lymphoma cells. In addition, transcription of the translocated bcl-2 allele is deregulated with activation of the normally minor bcl-2 P2 promoter. The mechanisms involved in the promoter shift from P1 to P2 are not known. We found that the murine IgH 3' enhancers increased bcl-2 P2 promoter activity in an episomal model of the translocation, and IgH enhancer region HS12 had the greatest effect. Quantitative chromatin immunoprecipitation (ChIP) assays revealed that localized histone H3 hyperacetylation of the P2 promoter was observed on the translocated allele in t(14;18) DHL-4 cells and also on the stably transfected bcl-2 promoter-IgH enhancer episomal construct. Analysis of the HS12 enhancer region revealed that a previously identified nuclear factor-kappaB (NF-kappaB) site and a previously uncharacterized downstream Cdx site, both of which are conserved in the human and murine IgH enhancers, were important for its enhancer activity and promoter activation. ChIP assays showed that C/EBPbeta bound to the HS12 Cdx site in vivo, and mutation of this site abrogated the binding of C/EBPbeta. Reduced expression of C/EBPbeta by transfection of small interfering RNA or interference with NF-kappaB activity decreased transcription from the bcl-2 promoters. These results demonstrate that the IgH 3' enhancers, particularly HS12, are important for the deregulation of bcl-2 promoter usage in t(14;18) lymphomas.

Indexed as

Translocation, GeneticAcetylationAnimalsChromatin ImmunoprecipitationChromosomes, Human, Pair 14Chromosomes, Human, Pair 18Enhancer Elements, GeneticGene Expression Regulation, NeoplasticGenes, Immunoglobulin Heavy ChainHistonesHumansLymphomaMiceMutagenesis, Site-DirectedNF-kappa BPromoter Regions, GeneticHistonesNF-kappa BProto-Oncogene Proteins c-bcl-2

Identifiers

PMID17043638
OpenAlexW1971025296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.