Evidence map›Paper›PMID 17042743›Full record

ArticleThe Biochemical journal2007

A feedback transcriptional mechanism controls the level of the arginine/lysine transporter cat-1 during amino acid starvation.

Alex B Lopez, Chuanping Wang, Charlie C Huang, Ibrahim Yaman, Yi Li, Kaushik Chakravarty, Peter F Johnson, Cheng-Ming Chiang, Martin D Snider, Ronald C Wek and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 89 citations in OpenAlex.

  1. Trial
  2. SOD1 Overexpression Alleviates HAntioxidants (Basel, Switzerland) · 2026
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  9. Review
  10. Review
  11. Article
  12. Article
  13. Metabolism of Amino Acids in Cancer.Frontiers in cell and developmental biology · 2020
    Review
  14. Metabolic regulation of cell growth and proliferation.Nature reviews. Molecular cell biology · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Arginine and Polyamines Fate inFrontiers in microbiology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Alex B LopezDepartment of Nutrition, Case Western Reserve University School of Medicine, Cleveland, OH 44106-4906, USA.
Chuanping Wang
Charlie C Huang
Ibrahim Yaman
Yi Li
Kaushik Chakravarty
Peter F Johnson
Cheng-Ming Chiang
Martin D Snider
Ronald C Wek
Maria Hatzoglou
National Institutes of Health · US

Funding

Regulation of Gene Expression During StressR01DK053307 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI HATZOGLOU, MARIA · 1998 to 2021
$9.6M
Translational Control by NutrientsR01DK060596 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI MARIA HATZOGLOU · 2002 to 2026
$6.3M
TRAINING IN METABOLISMT32DK007319 · NIDDK · CASE WESTERN RESERVE UNIVERSITY · PI BRUNENGRABER, HENRI · 1986 to 2013
$5.0M
E2-Cellular Complexes in HPV Chromatin TranscriptionR01CA103867 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHIANG, CHENG-MING · 2004 to 2017
$4.0M
Role of CEBP transcription factors in regulating cell growth and tumorigenesisZ01BC010328 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI JOHNSON, PETER · 2000 to 2008
$3.0M
NCI NIH HHS R01 CA103867NCI NIH HHS R01-CA103867NIDDK NIH HHS 5T32-DK07319NIDDK NIH HHS R01 DK053307NIDDK NIH HHS R01 DK060596NIDDK NIH HHS R01-DK53307NIDDK NIH HHS R01-DK60596NIDDK NIH HHS T32 DK007319
6 · The paper itself

Abstract

The adaptive response to amino acid limitation in mammalian cells inhibits global protein synthesis and promotes the expression of proteins that protect cells from stress. The arginine/lysine transporter, cat-1, is induced during amino acid starvation by transcriptional and post-transcriptional mechanisms. It is shown in the present study that the transient induction of cat-1 transcription is regulated by the stress response pathway that involves phosphorylation of the translation initiation factor, eIF2 (eukaryotic initiation factor-2). This phosphorylation induces expression of the bZIP (basic leucine zipper protein) transcription factors C/EBP (CCAAT/enhancer-binding protein)-beta and ATF (activating transcription factor) 4, which in turn induces ATF3. Transfection experiments in control and mutant cells, and chromatin immunoprecipitations showed that ATF4 activates, whereas ATF3 represses cat-1 transcription, via an AARE (amino acid response element), TGATGAAAC, in the first exon of the cat-1 gene, which functions both in the endogenous and in a heterologous promoter. ATF4 and C/EBPbeta activated transcription when expressed in transfected cells and they bound as heterodimers to the AARE in vitro. The induction of transcription by ATF4 was inhibited by ATF3, which also bound to the AARE as a heterodimer with C/EBPbeta. These results suggest that the transient increase in cat-1 transcription is due to transcriptional activation caused by ATF4 followed by transcriptional repression by ATF3 via a feedback mechanism.

Indexed as

Gene Expression RegulationActivating Transcription Factor 3Activating Transcription Factor 4Amino AcidsAnimalsArginineCationic Amino Acid Transporter 1CCAAT-Enhancer-Binding Protein-betaDimerizationEukaryotic Initiation Factor-2Feedback, PhysiologicalLysinePhosphorylationPromoter Regions, GeneticRatsRNA, MessengerActivating Transcription Factor 3Activating Transcription Factor 4Amino AcidsArginineCationic Amino Acid Transporter 1CCAAT-Enhancer-Binding Protein-betaEukaryotic Initiation Factor-2LysineRNA, Messenger

Identifiers

PMID17042743
PMCPMC1783987
OpenAlexW2094543218

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.