Evidence map›Paper›PMID 17041054›Full record

ArticleJournal of bacteriology2006

Characterization of a highly conserved island in the otherwise divergent Bordetella holmesii and Bordetella pertussis genomes.

D A Diavatopoulos, C A Cummings, H G J van der Heide, M van Gent, S Liew, D A Relman, F R Mooi

Abstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. International journal of molecular sciences · 2020
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Laboratory Diagnosis of Pertussis.Clinical microbiology reviews · 2015
    Review
  8. Article
  9. Article
  10. Insertion sequences shared by Bordetella species and implications for the biological diagnosis of pertussis syndrome.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2013
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

D A DiavatopoulosLaboratory for Vaccine Preventable Diseases, National Institute of Public Health and the Environment, Antonie van Leeuwenhoeklaan 9, P.O. Box 1, 3720 BA Bilthoven, The Netherlands.
C A Cummings
H G J van der Heide
M van Gent
S Liew
D A Relman
F R Mooi

Funding

Analytical Tools for Comparative Microbial GenomicsR33AI057188 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID ARNOLD · 2005 to 2006
$823k
Analytical Tools for Comparative Microbial GenomicsR21AI057188 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID ARNOLD · 2003 to 2004
$287k
Bordetella Response to Host Cues and Cell SignalsR03AI054970 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID ARNOLD · 2003 to 2004
$130k
NIAID NIH HHS AI054970NIAID NIH HHS AI057188NIAID NIH HHS R03 AI054970NIAID NIH HHS R21 AI057188NIAID NIH HHS R33 AI057188
6 · The paper itself

Abstract

The recently discovered pathogen Bordetella holmesii has been isolated from the airways and blood of diseased humans. Genetic events contributing to the emergence of B. holmesii are not understood, and its phylogenetic position among the bordetellae remains unclear. To address these questions, B. holmesii strains were analyzed by comparative genomic hybridization (CGH) to a Bordetella pertussis microarray and by multilocus sequence typing. Both methods indicated substantial sequence divergence between B. pertussis and B. holmesii. However, CGH identified a putative pathogenicity island of 66 kb that is highly conserved between these species and contains several IS481 elements that may have been laterally transferred from B. pertussis to B. holmesii. This island contains, among other genes, a functional, iron-regulated locus encoding the biosynthesis, export, and uptake of the siderophore alcaligin. The acquisition of this genomic island by B. holmesii may have significantly contributed to its emergence as a human pathogen. Horizontal gene transfer between B. pertussis and B. holmesii may also explain the unusually high sequence identity of their 16S rRNA genes.

Indexed as

Bacterial ProteinsBordetellaBordetella pertussisEvolution, MolecularGenome, BacterialGenomic IslandsHumansHydroxamic AcidsMolecular Sequence DataNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisPhylogenySequence Analysis, DNAalcaliginBacterial ProteinsHydroxamic Acids

Identifiers

PMID17041054
PMCPMC1698220

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.