Evidence map›Paper›PMID 17039346›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2006

Fine mapping of the clubroot resistance gene, Crr3, in Brassica rapa.

M Saito, N Kubo, S Matsumoto, K Suwabe, M Tsukada, M Hirai

Abstract read
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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 142 citations in OpenAlex.

  1. Review
  2. Article
  3. Rapid introgression of the clubroot resistance geneMolecular breeding : new strategies in plant improvement · 2025
    Article
  4. Genetic Mapping and Characterization of the Clubroot Resistance GeneInternational journal of molecular sciences · 2024
    Article
  5. Review
  6. Resilience of Canola toPlants (Basel, Switzerland) · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Analysis of the role ofFrontiers in plant science · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Identification of Novel LocusFrontiers in plant science · 2022
    Article
  18. Article
  19. A Proteome-Level Investigation IntoFrontiers in plant science · 2022
    Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

M SaitoGraduate School of Agriculture, Kyoto Prefectural University, Kyoto Prefectural Institute of Agricultural Biotechnology, 74 Oji, Kitainayazuma, Seika, Soraku, Kyoto, 619-0244, Japan.
N Kubo
S Matsumoto
K Suwabe
M Tsukada
M Hirai
Kyoto Prefectural University · JPJohn Innes Centre · GBNational Agriculture and Food Research Organization · JPZen-Noh (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A linkage map of Chinese cabbage (Brassica rapa) was constructed to localize the clubroot resistance (CR) gene, Crr3. Quantitative trait loci analysis using an F(3) population revealed a sharp peak in the logarithm of odds score around the sequence-tagged site (STS) marker, OPC11-2S. Therefore, this region contained Crr3. Nucleotide sequences of OPC11-2S and its proximal markers showed homology to sequences in the top arm of Arabidopsis chromosome 3, suggesting a synteny between the two species. For fine mapping of Crr3, a number of STS markers were developed based on genomic information from Arabidopsis. We obtained polymorphisms in 23 Arabidopsis-derived STS markers, 11 of which were closely linked to Crr3. The precise position of Crr3 was determined using a population of 888 F(2) plants. Eighty plants showing recombination around Crr3 locus were selected and used for the mapping. A fine map of 4.74 cM was obtained, in which two markers (BrSTS-41 and BrSTS-44) and three markers (OPC11-2S, BrSTS-54 and BrSTS-61) were cosegregated. Marker genotypes of the 21 selected F(2) families and CR tests of their progenies strongly suggested that the Crr3 gene is located in a 0.35 cM segment between the two markers, BrSTS-33 and BrSTS-78.

Indexed as

Chromosome MappingGenes, PlantArabidopsisBrassica rapaGenetic MarkersGenome, PlantPlant DiseasesQuantitative Trait LociGenetic Markers

Identifiers

PMID17039346
OpenAlexW2057647603

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.