Evidence map›Paper›PMID 17032755›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Shape and oligomerization state of the cytoplasmic domain of the phototaxis transducer II from Natronobacterium pharaonis.

Ivan L Budyak, Vitaliy Pipich, Olga S Mironova, Ramona Schlesinger, Giuseppe Zaccai, Judith Klein-Seetharaman

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Flexibility of the cytoplasmic domain of the phototaxis transducer II from Natronomonas pharaonis.Journal of biophysics (Hindawi Publishing Corporation : Online) · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ivan L BudyakInstitute for Structural Biology and Institute of Solid-State Research, Research Center Juelich, 52425 Juelich, Germany.
Vitaliy Pipich
Olga S Mironova
Ramona Schlesinger
Giuseppe Zaccai
Judith Klein-Seetharaman

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phototaxis allows archaea to adjust flagellar motion in response to light. In the photophobic response of Natronobacterium pharaonis, light-activated sensory rhodopsin II causes conformational changes in the transducer II protein (pHtrII), initiating the two-component signaling system analogous to bacterial chemotaxis. pHtrII's cytoplasmic domain (pHtrII-cyt) is homologous to the cytoplasmic domains of eubacterial chemotaxis receptors. Chemotaxis receptors require dimerization for activity and are in vivo-organized in large clusters. In this study we investigated the oligomerization and aggregation states of pHtrII-cyt by using chemical cross-linking, analytical gel-filtration chromatography, and small-angle neutron scattering. We show that pHtrII-cyt is monomeric in dilute buffers, but forms dimers in 4 M KCl, the physiological salt concentration for halophilic archaea. At high ammonium sulfate concentration, the protein forms higher-order aggregates. The monomeric protein has a rod-like shape, 202 A in length and 14.4 A in diameter; upon dimerization the length increases to 248 A and the diameter to 18.2 A. These results suggest that under high salt concentration the shape and oligomerization state of pHtrII-cyt are comparable to those of chemotaxis receptors.

Indexed as

LightArchaeal ProteinsBiopolymersCarotenoidsCross-Linking ReagentsCrystallography, X-RayDimerizationNatronobacteriumParticle SizePhototrophic ProcessesProtein Structure, QuaternaryProtein Structure, TertiaryArchaeal ProteinsBiopolymersCarotenoidsCross-Linking Reagentsphototaxis receptor sensory rhodopsin II, Natronobacterium pharaonis

Identifiers

PMID17032755
PMCPMC1592645

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.