Evidence map›Paper›PMID 17031001›Full record

ArticleEukaryotic cell2006

Function of the Dictyostelium discoideum Atg1 kinase during autophagy and development.

Turgay Tekinay, Mary Y Wu, Grant P Otto, O Roger Anderson, Richard H Kessin

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Aberrant Autophagy Impacts Growth and Multicellular Development in aFrontiers in cell and developmental biology · 2021
    Article
  7. Calmodulin-mediated events during the life cycle of the amoebozoan Dictyostelium discoideum.Biological reviews of the Cambridge Philosophical Society · 2020
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Autophagy in protists.Autophagy · 2011
    Review
  18. Autophagy-dependent rhodopsin degradation prevents retinal degeneration in Drosophila.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2010
    Article
  19. Review
  20. Autophagy in unicellular eukaryotes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2010
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Turgay TekinayDepartment of Anatomy and Cell Biology, P&S 12-517, Columbia University, 630 West 168th St., New York, NY 10032, USA.
Mary Y Wu
Grant P Otto
O Roger Anderson
Richard H Kessin
Columbia University · US

Funding

ROLE OF UBIQUITIM-LIKE PROTEINS IN DICTYOSTELIUR01GM033136 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KESSIN, RICHARD HARRY · 1985 to 2002
$1.5M
NIGMS NIH HHS GM33136-19NIGMS NIH HHS R01 GM033136
6 · The paper itself

Abstract

When starved, the amoebae of Dictyostelium discoideum initiate a developmental process that results in the formation of fruiting bodies in which stalks support balls of spores. The nutrients and energy necessary for development are provided by autophagy. Atg1 is a protein kinase that regulates the induction of autophagy in the budding yeast Saccharomyces cerevisiae. In addition to a conserved kinase domain, Dictyostelium Atg1 has a C-terminal region that has significant homology to the Caenorhabditis elegans and mammalian Atg1 homologues but not to the budding yeast Atg1. We investigated the function of the kinase and conserved C-terminal domains of D. discoideum Atg1 (DdAtg1) and showed that these domains are essential for autophagy and development. Kinase-negative DdAtg1 acts in a dominant-negative fashion, resulting in a mutant phenotype when expressed in the wild-type cells. Green fluorescent protein-tagged kinase-negative DdAtg1 colocalizes with red fluorescent protein (RFP)-tagged DdAtg8, a marker of preautophagosomal structures and autophagosomes. The conserved C-terminal region is essential for localization of kinase-negative DdAtg1 to autophagosomes labeled with RFP-tagged Dictyostelium Atg8. The dominant-negative effect of the kinase-defective mutant also depends on the C-terminal domain. In cells expressing dominant-negative DdAtg1, autophagosomes are formed and accumulate but seem not to be functional. By using a temperature-sensitive DdAtg1, we showed that DdAtg1 is required throughout development; development halts when the cells are shifted to the restrictive temperature, but resumes when cells are returned to the permissive temperature.

Indexed as

Amino Acid SequenceAnimalsAutophagyBiomarkersConserved SequenceDictyosteliumFood DeprivationGenes, DominantMutationPhagosomesProtein KinasesProtein TransportProtozoan ProteinsRecombinant Fusion ProteinsBiomarkersProtein KinasesProtozoan ProteinsRecombinant Fusion Proteins

Identifiers

PMID17031001
PMCPMC1595346
OpenAlexW2156818970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.