Evidence map›Paper›PMID 17030566›Full record

ArticleInfection and immunity2007

Identification of genes involved in the expression of atypical lipooligosaccharide structures from a second class of Haemophilus ducreyi.

Deborah M B Post, Robert S Munson, Beth Baker, Huachun Zhong, Joel A Bozue, Bradford W Gibson

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Interactions of the Skin PathogenFrontiers in immunology · 2020
    Review
  2. Multiple Class I and Class II Haemophilus ducreyi Strains Cause Cutaneous Ulcers in Children on an Endemic Island.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2018
    Article
  3. Article
  4. Article
  5. Defining Potential Vaccine Targets of Haemophilus ducreyi Trimeric Autotransporter Adhesin DsrA.Monoclonal antibodies in immunodiagnosis and immunotherapy · 2015
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Deborah M B PostBuck Institute for Age Research, 8001 Redwood Blvd., Novato, CA 94945, USA.
Robert S Munson
Beth Baker
Huachun Zhong
Joel A Bozue
Bradford W Gibson
Children’s Institute · USBuck Institute for Research on Aging · US

Funding

Structure and Function of Haemophilus ducreyi LOSR01AI031254 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI GIBSON, BRADFORD WAYNE · 1994 to 2007
$2.0M
CORE--LABORATORYP30HD034615 · NICHD · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI MUNSON, ROBERT S. · 1998 to 2002
$1.0M
GENETICS AND BIOLOGY OF THE LOS HAEMOPHILUS DUCREYIR01AI038444 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI MUNSON, ROBERT S. · 1997 to 2001
$486k
REGULATION OF THE HEMOLYSIN GENES OF HAEMOPHILUS DUCREYIF32AI009813 · NIAID · CHILDREN'S HOSPITAL (COLUMBUS) · PI BOZUE, JOEL A · 1997 to 1999
–
GENETICS AND BIOCHEMISTRY OF THE HEMOLYSIN OF H DUCREYIR01AI034967 · NIAID · WASHINGTON UNIVERSITY · PI MUNSON, ROBERT S. · 1994 to 1997
–
NIAID NIH HHS AI31254NIAID NIH HHS AI34967NIAID NIH HHS AI38444NIAID NIH HHS F32 AI009813NIAID NIH HHS F32-AI09813NIAID NIH HHS R01 AI031254NICHD NIH HHS HD34615
6 · The paper itself

Abstract

Haemophilus ducreyi is a gram-negative bacterium that is the causative agent of chancroid. Strain 35000HP has been well characterized and is representative of the majority of H. ducreyi strains. Strain 35000HP produces a lipooligosaccharide (LOS) that contains D-glycero-D-manno-heptose in the main oligosaccharide chain extension; the lbgB gene has been shown to encode the DD-heptosyltransferase. The lbgB gene is found in a gene cluster together with the lbgA gene, which encodes for the galactosyltransferase I. These two genes are flanked by two housekeeping genes, rpmE and xthA, encoding the ribosomal protein L31 and the exonuclease III, respectively. Recently, a second group of H. ducreyi strains have been identified. Strain 33921, a representative of the class II strains, produces an LOS that lacks DD-heptose in the oligosaccharide portion of its LOS. To better understand the biosynthesis of the DD-heptose-deficient 33921 LOS, we cloned and sequenced the corresponding lbgAB genomic region from strain 33921. Similar to strain 35000HP, the 33921 genome contains xthA and rpmE. However, between these two genes we identified genes encoding two putative glycosyltransferases that were not highly homologous to the 35000HP lbgAB genes. In this study, we demonstrate that the product of one of these genes encodes a galactosyltransferase. In addition, dot blot hybridization determined that 3 of 35 strains tested had the atypical transferases present, as did 4 strains characterized as class II strains by other criterion. These data indicate that the lbgAB genes can serve as one indicator of the classification of H. ducreyi strains.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialAmino Acid SequenceBacterial ProteinsCloning, MolecularElectrophoresis, Polyacrylamide GelGene ExpressionGlycosyltransferasesHaemophilus ducreyiImmunoblottingLipopolysaccharidesMolecular Sequence DataN-Acetyllactosamine SynthaseSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBacterial ProteinsGlycosyltransferaseslbgA protein, Haemophilus ducreyilbgB protein, H ducreyilipid-linked oligosaccharidesLipopolysaccharidesN-Acetyllactosamine Synthase

Identifiers

PMID17030566
PMCPMC1828386
OpenAlexW2140122126

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.