Evidence map›Paper›PMID 17028236›Full record

ArticleApplied and environmental microbiology2006

Multilocus sequence typing supports the hypothesis that cow- and human-associated Salmonella isolates represent distinct and overlapping populations.

S D Alcaine, Y Soyer, L D Warnick, W-L Su, S Sukhnanand, J Richards, E D Fortes, P McDonough, T P Root, N B Dumas and 2 more

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  3. Article
  4. Evaluation of multiplex nanopore sequencing forFrontiers in microbiology · 2022
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  9. Molecular Characterization ofInternational journal of bacteriology · 2017
    Article
  10. Article
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  12. Article
  13. Article
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  15. Article
  16. Molecular Typing ofFoods (Basel, Switzerland) · 2014
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

S D AlcaineDepartment of Food Science, 412 Stocking Hall, Cornell University, Ithaca, NY 14853, USA.
Y Soyer
L D Warnick
W-L Su
S Sukhnanand
J Richards
E D Fortes
P McDonough
T P Root
N B Dumas
Y Gröhn
M Wiedmann
Cornell University · USNew York State Department of Health · USWadsworth Center · US

Funding

FOOD &WATERBORNE DISEASES INTEGRATED RESEARCH NETWORK, ZOONOES RESEAR-N01AI030054 · NIAID · CORNELL UNIVERSITY · 2003 to 2003
–
NIAID NIH HHS N01 AI030054
6 · The paper itself

Abstract

A collection of 179 human and 156 bovine clinical Salmonella isolates obtained from across New York state over the course of 1 year was characterized using serotyping and a multilocus sequence typing (MLST) scheme based on the sequencing of three genes (fimA, manB, and mdh). The 335 isolates were differentiated into 52 serotypes and 72 sequence types (STs). Analyses of bovine isolates collected on different farms over time indicated that specific subtypes can persist over time on a given farm; in particular, a number of farms showed evidence for the persistence of a specific Salmonella enterica serotype Newport sequence type. Serotypes and STs were not randomly distributed among human and bovine isolates, and selected serotypes and STs were associated exclusively with either human or bovine sources. A number of common STs were geographically widespread. For example, ST6, which includes isolates representing serotype Typhimurium as well as the emerging serotype 4,5,12:i:-, was found among human and bovine isolates in a number of counties in New York state. Phylogenetic analyses supported the possibility that serotype 4,5,12:i:- is closely related to Salmonella serotype Typhimurium. Salmonella serotype Newport was found to represent two distinct evolutionary lineages that differ in their frequencies among human and bovine isolates. A number of Salmonella isolates carried two copies of manB (33 isolates) or showed small deletion events in fimA (nine isolates); these duplication and deletion events may provide mechanisms for the rapid diversification of Salmonella surface molecules. We conclude that the combined use of an economical three-gene MLST scheme and serotyping can provide considerable new insights into the evolution and transmission of Salmonella.

Indexed as

Bacterial Typing TechniquesSequence Analysis, DNAAnimalsBacterial ProteinsCattleCattle DiseasesHumansPhylogenySalmonellaSalmonella InfectionsSalmonella Infections, AnimalSerotypingSpecies SpecificityBacterial Proteins

Identifiers

PMID17028236
PMCPMC1694263
OpenAlexW1996882672

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.