Evidence map›Paper›PMID 17028224›Full record

ArticleApplied and environmental microbiology2006

Studies of the extracellular glycocalyx of the anaerobic cellulolytic bacterium Ruminococcus albus 7.

Paul J Weimer, Neil P J Price, Otini Kroukamp, Lydia-Marie Joubert, Gideon M Wolfaardt, Willem H Van Zyl

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Impacts of biofilms on the conversion of cellulose.Applied microbiology and biotechnology · 2020
    Review
  5. Characterization ofMicroorganisms · 2020
    Article
  6. Effects ofAnimals : an open access journal from MDPI · 2020
    Article
  7. The Ruminococci: key symbionts of the gut ecosystem.Journal of microbiology (Seoul, Korea) · 2018
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Form and function of Clostridium thermocellum biofilms.Applied and environmental microbiology · 2013
    Article
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Paul J WeimerU.S. Dairy Forage Research Center, Agricultural Research Service, U.S. Department of Agriculture, Madison, WI 53706, USA. pjweimer@wisc.edu
Neil P J Price
Otini Kroukamp
Lydia-Marie Joubert
Gideon M Wolfaardt
Willem H Van Zyl
Stellenbosch University · ZAAgricultural Research Service · USNational Center for Agricultural Utilization Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anaerobic cellulolytic bacteria are thought to adhere to cellulose via several mechanisms, including production of a glycocalyx containing extracellular polymeric substances (EPS). As the compositions and structures of these glycocalyces have not been elucidated, variable-pressure scanning electron microscopy (VP-SEM) and chemical analysis were used to characterize the glycocalyx of the ruminal bacterium Ruminococcus albus strain 7. VP-SEM revealed that growth of this strain was accompanied by the formation of thin cellular extensions that allowed the bacterium to adhere to cellulose, followed by formation of a ramifying network that interconnected individual cells to one another and to the unraveling cellulose microfibrils. Extraction of 48-h-old whole-culture pellets (bacterial cells plus glycocalyx [G] plus residual cellulose [C]) with 0.1 N NaOH released carbohydrate and protein in a ratio of 1:5. Boiling of the cellulose fermentation residue in a neutral detergent solution removed almost all of the adherent cells and protein while retaining a residual network of adhering noncellular material. Trifluoroacetic acid hydrolysis of this residue (G plus C) released primarily glucose, along with substantial amounts of xylose and mannose, but only traces of galactose, the most abundant sugar in most characterized bacterial exopolysaccharides. Linkage analysis and characterization by nuclear magnetic resonance suggested that most of the glucosyl units were not present as partially degraded cellulose. Calculations suggested that the energy demand for synthesis of the nonprotein fraction of EPS by this organism represents only a small fraction (<4%) of the anabolic ATP expenditure of the bacterium.

Indexed as

Bacterial AdhesionGlycocalyxAnaerobiosisCelluloseCulture MediaMicroscopy, Electron, ScanningRuminococcusSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCelluloseCulture Media

Identifiers

PMID17028224
PMCPMC1694240
OpenAlexW2013830700

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.