Evidence map›Paper›PMID 17024410›Full record

ArticleJournal of molecular modeling2007

A three-dimensional model of the human transglutaminase 1: insights into the understanding of lamellar ichthyosis.

Karen M Boeshans, Timothy C Mueser, Bijan Ahvazi

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of molecular modeling, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 33 citations in OpenAlex.

  1. Transglutaminase 1: Emerging Functions beyond Skin.International journal of molecular sciences · 2024
    Review
  2. A cellular disease model toward gene therapy ofMolecular therapy. Methods & clinical development · 2024
    Article
  3. Article
  4. Correction of the pathogenic mutation in TGM1 gene by adenine base editing in mutant embryos.Molecular therapy : the journal of the American Society of Gene Therapy · 2022
    Article
  5. Article
  6. Review
  7. Loss of NHE8 expression impairs ocular surface function in mice.American journal of physiology. Cell physiology · 2015
    Article
  8. Article
  9. Transglutaminase-1 mutations in Omani families with lamellar ichthyosis.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2013
    Article
  10. Regulation of the activities of the mammalian transglutaminase family of enzymes.Protein science : a publication of the Protein Society · 2012
    Review
  11. Article
  12. Review
  13. Article
  14. Framework for a protein ontology.BMC bioinformatics · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Karen M BoeshansX-ray Crystallography Facility/Office of Science and Technology, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD 20892-8024, USA.
Timothy C Mueser
Bijan Ahvazi
National Institute of Arthritis and Musculoskeletal and Skin Diseases · USUniversity of Toledo · US

Funding

NIAMS protein expression, purification, and X-ray structure determinationZ01AR041142 · NIAMS · ARTHRITIS, MUSCULOSKELETAL, SKIN DIS · PI AHVAZI, BIJAN · 2004 to 2007
$761k
Intramural NIH HHS
6 · The paper itself

Abstract

The stratum corneum, the outer layer of the epidermis, serves as a protective barrier to isolate the skin from the external environment. Keratinocyte transglutaminase 1 (TGase 1) catalyzes amide crosslinking between glutamine and lysine residues on precursor proteins forming the impermeable layers of the epidermal cell envelopes (CE), the highly insoluble membranous structures of the stratum corneum. Patients with the autosomal recessive skin disorder lamellar ichthyosis (LI) appear to have deficient cross-linking of the cell envelope due to mutations identified in TGase 1, linking this enzyme to LI. In the absence of a crystal structure, molecular modeling was used to generate the structure of TGase 1. We have mapped the known mutations of TGase 1 from our survey obtained from a search of PubMed and successfully predicted the impact of these mutations on LI. Furthermore, we have identified Ca(2+) binding sites and propose that Ca(2+) induces a cis to trans isomerization in residues near the active site as part of the enzyme transamidation activation. Docking experiments suggest that substrate binding subsequently induces the reverse cis to trans isomerization, which may be a significant part of the catalytic process. These results give an interpretation at the molecular level of previously reported mutations and lead to further insights into the structural model of TGase 1, providing a new basis for understanding LI.

Indexed as

Amino Acid SequenceBinding SitesCalciumCatalysisHumansIchthyosis, LamellarKeratinocytesModels, MolecularMolecular Sequence DataMutationProtein Structure, SecondarySequence Homology, Amino AcidTransglutaminasesCalciumtransglutaminase 1Transglutaminases

Identifiers

PMID17024410
OpenAlexW2046829871

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.