Evidence map›Paper›PMID 17024369›Full record

ArticleHuman genetics2007

Association of Hck genetic polymorphisms with gene expression and COPD.

Xiaozhu Zhang, Salahaddin Mahmudi-Azer, John E Connett, Nicholas R Anthonisen, Jian-Qing He, Peter D Paré, Andrew J Sandford

Abstract read
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In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Gene polymorphisms and chronic obstructive pulmonary disease.Journal of cellular and molecular medicine · 2014
    Article
  5. Article
  6. Article
  7. Updates on the COPD gene list.International journal of chronic obstructive pulmonary disease · 2012
    Review
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Xiaozhu ZhangJames Hogg iCAPTURE Centre for Cardiovascular and Pulmonary Research , St. Paul's Hospital, University of British Columbia, 1081 Burrard Street, Room 166, Vancouver, BC, Canada.
Salahaddin Mahmudi-Azer
John E Connett
Nicholas R Anthonisen
Jian-Qing He
Peter D Paré
Andrew J Sandford
St. Paul's Hospital · CAUniversity of Manitoba · CAUniversity of Minnesota · US

Funding

REMODELING OF HUMAN AIRWAYS IN DISEASER01HL064068 · NHLBI · UNIVERSITY OF BRITISH COLUMBIA · PI PARE, PETER DAVID · 1999 to 2002
$600k
NHLBI NIH HHS 5R01HL064068-04
6 · The paper itself

Abstract

Polymorphonuclear leukocytes (PMNs) are major effector cells in the chronic airway inflammation in chronic obstructive pulmonary disease (COPD). PMN degranulation is associated with degradation of extracellular matrix and tissue damage. Hck is an essential molecule in the signaling pathway regulating PMN degranulation. We hypothesized that polymorphisms affect the expression level of Hck, which, in turn, modulates PMN mediator release and tissue damage and influences the development of COPD. Here we systematically investigated genetic tag polymorphisms of the Hck gene, Hck mRNA and protein expression pattern in PMNs, and PMN mediator release (myeloperoxidase) in 60 healthy white subjects, and assessed their association with the use of several genetic models. The association of genetic polymorphisms with COPD-related phenotypes was determined in the lung healthy study cohort (LHS). We identified a novel 15 bp insertion/deletion polymorphism (8,656 L/S) in intron 1 of the Hck gene, which was associated with differential expression of Hck protein and PMN myeloperoxidase release. In the LHS cohort, there was significant interaction between the 8,656 L/S polymorphism and smoking on baseline lung function and 8,656 L/S was associated with bronchodilator response. These data suggest that the insertion/deletion polymorphism could be a functional polymorphism of the Hck gene, may contribute to COPD pathogenesis and modify COPD-related phenotypes.

Indexed as

Gene ExpressionPolymorphism, Single NucleotideAdultDNA Mutational AnalysisFemaleFlow CytometryGene FrequencyGenotypeHumansImmunohistochemistryLinkage DisequilibriumMaleMiddle AgedMutagenesis, InsertionalMutationProto-Oncogene Proteins c-hckHCK protein, humanProto-Oncogene Proteins c-hckRNA, Messenger

Identifiers

PMID17024369
OpenAlexW1965664402

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.