Evidence map›Paper›PMID 17020617›Full record

ArticleBMC structural biology2006

The crystal structure of superoxide dismutase from Plasmodium falciparum.

Ian W Boucher, Andrzej M Brzozowski, James A Brannigan, Claudia Schnick, Derek J Smith, Sue A Kyes, Anthony J Wilkinson

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Crystal structure of an iron superoxide dismutase from the pathogenic amoeba Acanthamoeba castellanii.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Iron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures.Acta crystallographica. Section F, Structural biology communications · 2015
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ian W BoucherStructural Biology Laboratory, Department of Chemistry, University of York, York YO10 5YW, UK. boucher@ysbl.york.ac.uk
Andrzej M Brzozowski
James A Brannigan
Claudia Schnick
Derek J Smith
Sue A Kyes
Anthony J Wilkinson
University of York · GBBioinformatics Institute · SGJohn Radcliffe Hospital · GB

Funding

Wellcome TrustWellcome Trust 066742/F/01/Z
6 · The paper itself

Abstract

backgroundSuperoxide dismutases (SODs) are important enzymes in defence against oxidative stress. In Plasmodium falciparum, they may be expected to have special significance since part of the parasite life cycle is spent in red blood cells where the formation of reactive oxygen species is likely to be promoted by the products of haemoglobin breakdown. Thus, inhibitors of P. falciparum SODs have potential as anti-malarial compounds. As a step towards their development we have determined the crystal structure of the parasite's cytosolic iron superoxide dismutase.

resultsThe cytosolic iron superoxide dismutase from P. falciparum (PfFeSOD) has been overexpressed in E. coli in a catalytically active form. Its crystal structure has been solved by molecular replacement and refined against data extending to 2.5 A resolution. The structure reveals a two-domain organisation and an iron centre in which the metal is coordinated by three histidines, an aspartate and a solvent molecule. Consistent with ultracentrifugation analysis the enzyme is a dimer in which a hydrogen bonding lattice links the two active centres.

conclusionThe tertiary structure of PfFeSOD is very similar to those of a number of other iron-and manganese-dependent superoxide dismutases, moreover the active site residues are conserved suggesting a common mechanism of action. Comparison of the dimer interfaces of PfFeSOD with the human manganese-dependent superoxide dismutase reveals a number of differences, which may underpin the design of parasite-selective superoxide dismutase inhibitors.

Indexed as

Amino Acid SequenceAnimalsCloning, MolecularCrystallizationCrystallography, X-RayDimerizationElectrophoresis, Polyacrylamide GelEscherichia coliHydrogen BondingModels, MolecularMolecular Sequence DataPlasmodium falciparumProtein Structure, TertiaryRecombinant ProteinsSequence Homology, Amino AcidSuperoxide DismutaseRecombinant ProteinsSuperoxide Dismutase

Identifiers

PMID17020617
PMCPMC1618392
OpenAlexW1763525035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.