Evidence map›Paper›PMID 17018159›Full record

ArticleBMC gastroenterology2006

Helicobacter pylori genotypes identified in gastric biopsy specimens from Jordanian patients.

Laila F Nimri, Ismail Matalka, Kamal Bani Hani, Marwa Ibrahim

Abstract read
In one paragraph

Article in BMC gastroenterology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Allelic Variation ofMicroorganisms · 2025
    Article
  2. Assessment ofHeliyon · 2024
    Article
  3. Article
  4. Article
  5. Prevalence ofPathogens (Basel, Switzerland) · 2019
    Article
  6. Trends and Risk Factors of Gastric Cancer in Iran (2005-2010).International journal of preventive medicine · 2019
    Article
  7. Analysis ofGastroenterology research · 2018
    Article
  8. Prevalence of CagA and antimicrobial sensitivity ofInfectious agents and cancer · 2018
    Article
  9. Article
  10. Analysis ofMicrobiology insights · 2016
    Article
  11. Article
  12. Prevalence and distribution of Helicobacter pylori cagA and vacA genotypes in the Moroccan population with gastric disease.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2012
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. The association of vacA genotypes and Helicobacter pylori-related gastroduodenal diseases in the Middle East.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2009
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Laila F NimriDepartment of Medical Laboratory Sciences, Jordan University of Science & Technology, Irbid, Jordan. nimri@just.edu.jo
Ismail Matalka
Kamal Bani Hani
Marwa Ibrahim

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe genetic diversity of Helicobacter pylori can be analyzed at two different levels: the genomic variation between strains originating from different individuals, and the variation in bacterial populations within an individual host. We reported for the first time the H. pylori genotypes in Jordanian patients with gastrointestinal diseases.

methodsUpper endoscopy was performed on 250 patients with symptoms of gastrointestinal diseases. Multiple gastric biopsy specimens were taken from the antrum. All the biopsies were tested by PCR for the H. pylori virulence genes vacA, cagA, and iceA, and 151 were tested by histology.

resultsThe biopsies positive for H. pylori by PCR were 110/250 (44%), and by histology 117/151 (77.5%), and these results were highly associated (P < 0.02). Analyses of virulence genes revealed that iceA2 (73.6%) was the predominant genotype, the vacAs2 allele was more frequently identified than the vacAs1 allele, while the cagA genotype was low (26.4%). The presence of certain genotypes might be associated with each other, but the presence of certain genotypes was not significantly associated with the age, or gender of the patient.

conclusionThe results illustrate the geographic nature of the genetic diversity of H. pylori, as the identified genotypes are similar to those reported in neighboring countries. This study provides a baseline data of H. pylori genotypes identified in gastric biopsy specimens from Jordan, serving as a powerful epidemiological tool for prospective investigations to better understand the genetic diversity of this pathogen.

Indexed as

Genetic VariationAdolescentAdultAgedAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinsBiopsyFemaleGastrointestinal DiseasesGenotypeHelicobacter pyloriHumansJordanMaleMiddle AgedAntigens, BacterialBacterial Outer Membrane ProteinsBacterial ProteinscagA protein, Helicobacter pyloriice nucleation proteinVacA protein, Helicobacter pyloriVirulence Factors

Identifiers

PMID17018159
PMCPMC1599735

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.