Evidence map›Paper›PMID 17013613›Full record

ArticlePlanta2007

Isolation of Zn-responsive genes from two accessions of the hyperaccumulator plant Thlaspi caerulescens.

V H Hassinen, A I Tervahauta, P Halimaa, M Plessl, S Peräniemi, H Schat, M G M Aarts, K Servomaa, S O Kärenlampi

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Role ofFrontiers in plant science · 2017
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. The molecular mechanism of zinc and cadmium stress response in plants.Cellular and molecular life sciences : CMLS · 2012
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

V H HassinenInstitute of Applied Biotechnology, University of Kuopio, P.O. Box 1627, 70211 Kuopio, Finland.
A I Tervahauta
P Halimaa
M Plessl
S Peräniemi
H Schat
M G M Aarts
K Servomaa
S O Kärenlampi
University of Eastern Finland · FIEtelä-Karjalan sosiaali ja terveyspiiri · FIInstitute of Bioinformatics and Systems Biology · DEVrije Universiteit Amsterdam · NLWageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several populations with different metal tolerance, uptake and root-to-shoot transport are known for the metal hyperaccumulator plant Thlaspi caerulescens. In this study, genes differentially expressed under various Zn exposures were identified from the shoots of two T. caerulescens accessions (calaminous and non-calaminous) using fluorescent differential display RT-PCR. cDNA fragments from 16 Zn-responsive genes, including those encoding metallothionein (MT) type 2 and type 3, MRP-like transporter, pectin methylesterase (PME) and Ole e 1-like gene as well as several unknown genes, were eventually isolated. The full-length MT2 and MT3 sequences differ from those previously isolated from other Thlaspi accessions, possibly representing new alleles or isoforms. Besides the differential expression in Zn exposures, the gene expression was dependent on the accession. Thlaspi homologues of ClpP protease and MRP transporter were induced at high Zn concentrations. MT2 and PME were expressed at higher levels in the calaminous accession. The MTs and MRP transporter expressed in transgenic yeasts were capable of conferring Cu and Cd tolerance, whereas the Ole e 1-like gene enhanced toxicity to these metals. The MTs increased yeast intracellular Cd content. As no significant differences were found between Arabidopsis and Thlaspi MTs, they apparently do not differ in their capacity to bind metals. However, the higher levels of MT2 in the calaminous accession may contribute to the Zn-adapted phenotype.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersCarboxylic Ester HydrolasesEndopeptidase ClpGene Expression ProfilingGene Expression Regulation, PlantMetallothioneinMolecular Sequence DataPlant ShootsThlaspiZincATP-Binding Cassette TransportersCarboxylic Ester HydrolasesEndopeptidase ClpMetallothioneinpectinesteraseZinc

Identifiers

PMID17013613
OpenAlexW2159190314

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.