Evidence map›Paper›PMID 17012538›Full record

ArticleEukaryotic cell2006

VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa.

Karine Dementhon, Gopal Iyer, N Louise Glass

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
  2. Article
  3. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  4. Article
  5. Transcription FactorJournal of fungi (Basel, Switzerland) · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Understanding the Role ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Genetic Analysis ofmSphere · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Karine DementhonDepartment of Plant and Microbial Biology, The University of California, Berkeley, CA 94720-3102, USA.
Gopal Iyer
N Louise Glass
University of California, Berkeley · US

Funding

ANALYSIS OF PROGRAMMED CELL DEATH IN FILAMENTOUS FUNGIR01GM060468 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GLASS, N LOUISE · 2000 to 2014
$3.6M
NIGMS NIH HHS GM60468NIGMS NIH HHS R01 GM060468
6 · The paper itself

Abstract

Nonself recognition during somatic growth is an essential and ubiquitous phenomenon in both prokaryotic and eukaryotic species. In filamentous fungi, nonself recognition is also important during vegetative growth. Hyphal fusion between genetically dissimilar individuals results in rejection of heterokaryon formation and in programmed cell death of the fusion compartment. In filamentous fungi, such as Neurospora crassa, nonself recognition and heterokaryon incompatibility (HI) are regulated by genetic differences at het loci. In N. crassa, mutations at the vib-1 locus suppress nonself recognition and HI mediated by genetic differences at het-c/pin-c, mat, and un-24/het-6. vib-1 is a homolog of Saccharomyces cerevisiae NDT80, which is a transcriptional activator of genes during meiosis. For this study, we determined that vib-1 encodes a nuclear protein and showed that VIB-1 localization varies during asexual reproduction and during HI. vib-1 is required for the expression of genes involved in nonself recognition and HI, including pin-c, tol, and het-6; all of these genes encode proteins containing a HET domain. vib-1 is also required for the production of downstream effectors associated with HI, including the production of extracellular proteases upon carbon and nitrogen starvation. Our data support a model in which mechanisms associated with starvation and nonself recognition/HI are interconnected. VIB-1 is a major regulator of responses to nitrogen and carbon starvation and is essential for the expression of genes involved in nonself recognition and death in N. crassa.

Indexed as

ApoptosisBase SequenceDNA, FungalFungal ProteinsGene ExpressionGenes, FungalModels, BiologicalMutationNeurospora crassaNuclear ProteinsPeptide HydrolasesRecombinant Fusion ProteinsDNA, FungalFungal ProteinsNuclear ProteinsPeptide HydrolasesRecombinant Fusion Proteins

Identifiers

PMID17012538
PMCPMC1694810
OpenAlexW2171555946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.