Evidence map›Paper›PMID 17012388›Full record

ArticleJournal of bacteriology2006

The algT gene of Pseudomonas syringae pv. glycinea and new insights into the transcriptional organization of the algT-muc gene cluster.

Alexander Schenk, Michael Berger, Lisa M Keith, Carol L Bender, Georgi Muskhelishvili, Matthias S Ullrich

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Alexander SchenkSchool of Engineering and Sciences, Campus Ring 1, International University Bremen, D-28759 Bremen, Germany.
Michael Berger
Lisa M Keith
Carol L Bender
Georgi Muskhelishvili
Matthias S Ullrich
Constructor University · DEOklahoma State University · US

Funding

PSEUDOMONAS SYRINGAE VIRULENCE AND ALGINATE SYNTHESISR01AI043311 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI BENDER, CAROL L · 1998 to 2000
$150k
NIAID NIH HHS AI 43311
6 · The paper itself

Abstract

The phytopathogenic bacterium Pseudomonas syringae pv. glycinea infects soybean plants and causes bacterial blight. In addition to P. syringae, the human pathogen Pseudomonas aeruginosa and the soil bacterium Azotobacter vinelandii produce the exopolysaccharide alginate, a copolymer of d-mannuronic and l-guluronic acids. Alginate production in P. syringae has been associated with increased fitness and virulence in planta. Alginate biosynthesis is tightly controlled by proteins encoded by the algT-muc regulatory gene cluster in P. aeruginosa and A. vinelandii. These genes encode the alternative sigma factor AlgT (sigma(22)), its anti-sigma factors MucA and MucB, MucC, a protein with a controversial function that is absent in P. syringae, and MucD, a periplasmic serine protease and homolog of HtrA in Escherichia coli. We compared an alginate-deficient algT mutant of P. syringae pv. glycinea with an alginate-producing derivative in which algT is intact. The alginate-producing derivative grew significantly slower in vitro growth but showed increased epiphytic fitness and better symptom development in planta. Evaluation of expression levels for algT, mucA, mucB, mucD, and algD, which encodes an alginate biosynthesis gene, showed that mucD transcription is not dependent on AlgT in P. syringae in vitro. Promoter mapping using primer extension experiments confirmed this finding. Results of reverse transcription-PCR demonstrated that algT, mucA, and mucB are cotranscribed as an operon in P. syringae. Northern blot analysis revealed that mucD was expressed as a 1.75-kb monocistronic mRNA in P. syringae.

Indexed as

Genes, BacterialTranscription, GeneticAlginatesBacterial ProteinsGlucuronic AcidGlycine maxHexuronic AcidsMolecular Sequence DataMultigene FamilyMutationOperonPlant DiseasesPseudomonas syringaeSerine EndopeptidasesSigma FactorAlginatesBacterial ProteinsGlucuronic AcidHexuronic AcidsMucA protein, PseudomonasMucB protein, BacteriaSerine EndopeptidasesSigma Factor

Identifiers

PMID17012388
PMCPMC1698189
OpenAlexW1999616644

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.