Evidence map›Paper›PMID 17009409›Full record

ArticleWorld journal of gastroenterology2006

Genotype-dependent activation or repression of HBV enhancer II by transcription factor COUP-TF1.

Silke F Fischer, Katja Schmidt, Nicola Fiedler, Dieter Glebe, Christian Schüttler, Jianguang Sun, Wolfram H Gerlich, Reinald Repp, Stephan Schaefer

Abstract read
In one paragraph

Article in World journal of gastroenterology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Transcriptional regulation of genetic variants in theThe Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Origins and Evolution of Hepatitis B Virus and Hepatitis D Virus.Cold Spring Harbor perspectives in medicine · 2016
    Review
  8. Article
  9. Hepatitis B virus taxonomy and hepatitis B virus genotypes.World journal of gastroenterology · 2007
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Silke F FischerInstitut für Medizinische Virologie, Justus-Liebig-Universität Giessen, Germany.
Katja Schmidt
Nicola Fiedler
Dieter Glebe
Christian Schüttler
Jianguang Sun
Wolfram H Gerlich
Reinald Repp
Stephan Schaefer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo study the expression of HBV enhancer II by transcription factor COUP-TF1.

methodsIn order to study the regulation of HBV variants in the vicinity of the NRRE we cloned luciferase constructs containing the HBV enhancer II from variants and from HBV genotypes A and D and cotransfected them together with expression vectors for COUP-TF1 into HepG2 cells.

resultsOur findings show that enhancer II of HBV genotype A is also repressed by COUP-TF1. In contrast, two different enhancer II constructs of HBV genotype D were activated by COUP-TF1. The activation was independent of the NRRE because a natural variant with a deletion of nt 1763-1770 was still activated by COUP-TF1.

conclusionRegulation of transcription of the HBV genome seems to differ among HBV genomes derived from different genotypes. These differences in transcriptional control among HBV genotypes may be the molecular basis for differences in the clinical course among HBV genotypes.

Indexed as

Base SequenceCell Line, TumorCOUP Transcription Factor IDNA, ViralElectrophoretic Mobility Shift AssayEnhancer Elements, GeneticGene DeletionGene Expression Regulation, ViralGenotypeHepatitis B virusHumansMolecular Sequence DataTransfectionCOUP Transcription Factor IDNA, ViralNR2F1 protein, human

Identifiers

PMID17009409
PMCPMC4124418

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.