Evidence map›Paper›PMID 17006645›Full record

ArticleGlycoconjugate journal2006

Comparative characterisation of recombinant invertebrate and vertebrate peptide O-Xylosyltransferases.

Andrea Brunner, Daniel Kolarich, Josef Voglmeir, Katharina Paschinger, Iain B H Wilson

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Glycoconjugate journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. N-glycomic Complexity in Anatomical Simplicity:Frontiers in molecular biosciences · 2019
    Review
  4. Mucin-Type O-Glycosylation in Invertebrates.Molecules (Basel, Switzerland) · 2015
    Review
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Andrea BrunnerDepartment für Chemie der, Universität für Bodenkultur, Muthgasse 18, A-1190, Wien, Austria.
Daniel Kolarich
Josef Voglmeir
Katharina Paschinger
Iain B H Wilson
BOKU University · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chondroitin and heparan sulphates have key functions in animal development and their synthesis is initiated by the action of UDP-alpha-D-xylose:proteoglycan core protein beta-D-xylosyltransferase (EC 2.4.2.26). cDNAs encoding this enzyme have been previously cloned from mammalian species; this in turn facilitated identification of corresponding Caenorhabditis elegans (sqv-6) and Drosophila melanogaster (oxt) genes. In the present study, we report the expression in Pichia pastoris and subsequent assay using either MALDI-TOF MS or RP-HPLC of recombinant forms of the Caenorhabditis xylosyltransferase SQV-6 and the human xylosyltransferase I, in addition to extending our previous studies on the xylosyltransferase from Drosophila. The enzyme activities were tested with a number of peptide substrates based on portions of the human bikunin, human perlecan and Drosophila syndecan core peptides. Whereas a variant of the latter, containing two Ser-Gly motifs was only modified on one of these motifs, the perlecan peptide with three Ser-Gly motifs could be multiply modified in vitro. Using this substrate, we could for the first time follow, by mass spectrometry, the xylosylation of a peptide with multiple xylosyltransferase acceptor motifs.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBinding SitesCaenorhabditis elegansChromatography, High Pressure LiquidDNA, ComplementaryDrosophila melanogasterHeparan Sulfate ProteoglycansHumansIn Vitro TechniquesMolecular Sequence DataPentosyltransferasesPeptide FragmentsPichiaRecombinant ProteinsDNA, ComplementaryHeparan Sulfate ProteoglycansPentosyltransferasesPeptide FragmentsperlecanRecombinant ProteinsSyndecansUDP Xylose-Protein Xylosyltransferase

Identifiers

PMID17006645
OpenAlexW2022162897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.