Evidence map›Paper›PMID 17005813›Full record

ArticleAntimicrobial agents and chemotherapy2006

High-throughput and facile assay of antimicrobial peptides using pH-controlled fluorescence resonance energy transfer.

Young Soo Kim, Hyung Joon Cha

Abstract readEvaluation Study
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Young Soo KimDepartment of Chemical Engineering, Pohang University of Science and Technology, Pohang, Korea.
Hyung Joon Cha

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amphipathic antimicrobial peptides can destroy bacteria cells by inducing membrane permeabilization, forming one strategy for innate defense by various organisms. However, although the antimicrobial peptides are considered a promising alternative for use against multidrug-resistant bacteria, large-scale screening of potential candidate antimicrobial peptides will require a simple, rapid assay for antimicrobial activity. Here, we describe a novel fluorescence resonance energy transfer (FRET)-based assay system for antimicrobial peptides which takes advantage of pH-related changes in FRET efficiency due to the instability of enhanced yellow fluorescent protein versus the stability of enhanced cyan fluorescent protein in a reduced-pH environment. We successfully showed that quantification of antimicrobial activity is possible through a difference of FRET efficiency between ECFP-EYFP fusion molecules released from disrupted Escherichia coli in an extracellular environment (pH 6) and those retained in an intracellular environment (pH approximately 7). Thus, we herein suggest a new simple, effective, and efficient pH-controlled FRET-based antimicrobial peptide screening method applicable to high-throughput screening of candidate peptide libraries.

Indexed as

AnimalsAntimicrobial Cationic PeptidesBacterial ProteinsColony Count, MicrobialEscherichia coliFluorescence Resonance Energy TransferGreen Fluorescent ProteinsHydrogen-Ion ConcentrationLuminescent ProteinsMagaininsMicrobial Sensitivity TestsXenopus ProteinsAntimicrobial Cationic PeptidesBacterial ProteinsCyan Fluorescent ProteinGreen Fluorescent ProteinsLuminescent Proteinsmagainin 2 peptide, XenopusMagaininsXenopus Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID17005813
PMCPMC1610063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.