Evidence map›Paper›PMID 17005649›Full record

ArticleJournal of virology2006

Mutational analysis of the lassa virus promoter.

Meike Hass, Martina Westerkofsky, Stefanie Müller, Beate Becker-Ziaja, Carola Busch, Stephan Günther

Abstract readComparative Study
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Review
  2. Review
  3. Journal of virology · 2023
    Article
  4. Lassa Virus Genetics.Current topics in microbiology and immunology · 2023
    Article
  5. Lassa Virus Structural Biology and Replication.Current topics in microbiology and immunology · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. RNA ligands activate the Machupo virus polymerase and guide promoter usage.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Biochemical characterization of the Lassa virus L protein.The Journal of biological chemistry · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Arenavirus Quasispecies and Their Biological Implications.Current topics in microbiology and immunology · 2016
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Meike HassBernhard-Nocht-Institute of Tropical Medicine, Bernhard-Nocht-Strasse 74, D-20359 Hamburg, Germany.
Martina Westerkofsky
Stefanie Müller
Beate Becker-Ziaja
Carola Busch
Stephan Günther

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The promoter sequences directing viral gene expression and genome replication of arenaviruses reside within the 3' and 5' termini of each RNA segment. The terminal 19 nucleotides at both ends are highly conserved among all arenavirus species and are almost completely complementary to each other. This study aimed at characterizing the Lassa virus promoter in detail. The relevance of each position in the promoter was studied by site-directed mutagenesis using the Lassa virus minireplicon system. The data indicate that the Lassa virus promoter functions as a duplex, regulates transcription and replication in a coordinated manner, and is composed of two functional elements, a sequence-specific region from residue 1 to 12 and a variable complementary region from residue 13 to 19. The first region appears to interact with the replication complex mainly via base-specific interactions, while in the second region solely base pairing between 3' and 5' promoter ends is important for promoter function.

Indexed as

Gene Expression Regulation, ViralBase PairingBase SequenceDNA PrimersLassa virusModels, GeneticMolecular Sequence DataMutagenesis, Site-DirectedPolymerase Chain ReactionPromoter Regions, GeneticSequence Analysis, DNADNA Primers

Identifiers

PMID17005649
PMCPMC1676312

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.