Evidence map›Paper›PMID 16999936›Full record

ArticleBiochemical and biophysical research communications2006

APOBEC-1 and AID are nucleo-cytoplasmic trafficking proteins but APOBEC3G cannot traffic.

Ryan P Bennett, Elie Diner, Mark P Sowden, Joshua A Lees, Joseph E Wedekind, Harold C Smith

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Deciphering miRNAs' Action through miRNA Editing.International journal of molecular sciences · 2019
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ryan P BennettDepartment of Biochemistry, Box 712, University of Rochester, 601 Elmwood Avenue, Rochester, NY 14642, USA.
Elie Diner
Mark P Sowden
Joshua A Lees
Joseph E Wedekind
Harold C Smith
University of Rochester · US

Funding

Training in HIV Replication and PathogenesisT32AI049815 · NIAID · UNIVERSITY OF ROCHESTER · PI WEDEKIND, JOSEPH E · 2001 to 2020
$3.5M
The Role of mRNA Editing in B Cell DevelopmentR21AI054369 · NIAID · UNIVERSITY OF ROCHESTER · PI SMITH, HAROLD C · 2003 to 2004
$473k
Based deamination by CEM15 suppresses HIV-1 InfectivityR21AI058789 · NIAID · UNIVERSITY OF ROCHESTER · PI SMITH, HAROLD C · 2004 to 2005
$468k
Development of a Novel HIV/AIDS Therapeutic Activating the APOBEC3G Host DefenseR21AI095007 · NIAID · OYAGEN, INC. · PI SMITH, HAROLD C · 2011 to 2012
$462k
NIAID NIH HHS R21 AI054369NIAID NIH HHS R21 AI058789NIAID NIH HHS R21 AI095007NIAID NIH HHS R21 AI58789NIAID NIH HHS T32 AI049815NIAID NIH HHS T32 AI49815
6 · The paper itself

Abstract

Human APOBEC3G (hA3G) is a member of the APOBEC-1 related protein (ARP) family of cytidine deaminases. hA3G functions as a natural defense against endogenous retrotransposons and a multitude of retroviruses, most notably human immunodeficiency virus type 1 (HIV-1). Nothing is known about the cellular function of hA3G, however, upon HIV-1 infection hA3G functions as an antiviral factor by mutating viral single-stranded DNA during reverse transcription. Whereas homologous deaminases such as APOBEC-1 and AID act on RNA and DNA, respectively, in the cell nucleus, hA3G mutagenic activity appears to be restricted to the cytoplasm. We demonstrate that hA3G is not a nucleo-cytoplasmic shuttling protein like APOBEC-1 and AID, but is strongly retained in the cytoplasm through a mechanism that involves both the N and C-terminal regions of the protein.

Indexed as

AICDA (Activation-Induced Cytidine Deaminase)Amino Acid SequenceAPOBEC-1 DeaminaseCell NucleusCytidine DeaminaseCytoplasmHeLa CellsHumansLeucineMolecular Sequence DataProtein TransportSequence AlignmentSequence Homology, Amino AcidAICDA (Activation-Induced Cytidine Deaminase)APOBEC-1 DeaminaseAPOBEC1 protein, humanCytidine DeaminaseLeucine

Identifiers

PMID16999936
PMCPMC1847397
OpenAlexW2029917941

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.