Evidence map›Paper›PMID 16998183›Full record

ArticleNucleic acids research2006

Covalent binding of the natural antimicrobial peptide indolicidin to DNA abasic sites.

Christophe Marchand, Krzysztof Krajewski, Hsiu-Fang Lee, Smitha Antony, Allison A Johnson, Ronak Amin, Peter Roller, Mamuka Kvaratskhelia, Yves Pommier

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 169 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Nanosystems for delivery of indolicidin peptide.Frontiers in medical technology · 2026
    Review
  5. Combating Bacterial Infections with Vitamin D-Induced Antimicrobial Peptides.Advances in experimental medicine and biology · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. SystematicJAC-antimicrobial resistance · 2024
    Article
  18. Article
  19. Unravelling the mechanisms causing murepavadin resistance inFrontiers in cellular and infection microbiology · 2024
    Article
  20. Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Christophe MarchandLaboratory of Molecular Pharmacology, Center for Cancer Research, Building 37, Room 5068, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-4255, USA.
Krzysztof Krajewski
Hsiu-Fang Lee
Smitha Antony
Allison A Johnson
Ronak Amin
Peter Roller
Mamuka Kvaratskhelia
Yves Pommier
National Institutes of Health · USThe Ohio State University · USCenter for Cancer Research · USNational Cancer Institute · US

Funding

Structure and function of HIV-1 integraseR01AI062520 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KVARATSKHELIA, MAMUKA · 2006 to 2020
$5.3M
PROTEIN-ASSOCIATED DNA BREAKS AS INDICATOR OF TOPOISOMERASE INHIBITIONZ01BC006150 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI POMMIER, YVES · 1996 to 2008
$1.5M
PHARMACOLOGY OF THE HIV VIRAL DNA AND RETROVIRAL INTEGRASESZ01BC007333 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI POMMIER, YVES · 1996 to 2008
$1.0M
Intramural NIH HHSNIAID NIH HHS R01 AI062520
6 · The paper itself

Abstract

Indolicidin is a host defense tridecapeptide that inhibits the catalytic activity of HIV-1 integrase in vitro. Here we have elucidated its mechanism of integrase inhibition. Using crosslinking and mass spectrometric footprinting approaches, we found that indolicidin interferes with formation of the catalytic integrase-DNA complex by directly binding DNA. Further characterization revealed that the peptide forms covalent links with abasic sites. Indolicidin crosslinks single- or double-stranded DNAs and various positions of the viral cDNA with comparable efficiency. Using truncated and chemically modified peptides, we show that abasic site crosslinking is independent of the PWWP motif but involves the indolicidin unique lysine residue and the N- and C- terminal NH2 groups. Because indolicidin can also inhibit topoisomerase I, we believe that multiple actions at the level of DNA might be a common property of antimicrobial peptides.

Indexed as

Antimicrobial Cationic PeptidesBinding SitesDNADNA, Single-StrandedDNA Topoisomerases, Type IHIV IntegraseLysineProtein BindingSchiff BasesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAntimicrobial Cationic PeptidesDNADNA, Single-StrandedDNA Topoisomerases, Type IHIV IntegraseindolicidinLysineRIN 25 peptideSchiff Bases

Identifiers

PMID16998183
PMCPMC1636436
OpenAlexW2101158888

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.