Evidence map›Paper›PMID 16997960›Full record

ArticleJournal of bacteriology2006

Mutation in a "tesB-like" hydroxyacyl-coenzyme A-specific thioesterase gene causes hyperproduction of extracellular polyhydroxyalkanoates by Alcanivorax borkumensis SK2.

Julia S Sabirova, Manuel Ferrer, Heinrich Lünsdorf, Victor Wray, Rainer Kalscheuer, Alexander Steinbüchel, Kenneth N Timmis, Peter N Golyshin

Open access · greenAbstract readEvaluation Study
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 86 citations in OpenAlex.

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  7. High-quality physiology ofFrontiers in bioengineering and biotechnology · 2023
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  9. Bioplastics for a circular economy.Nature reviews. Materials · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Julia S SabirovaDepartment of Environmental Microbiology, HZI-Helmholtz Center fro Infection Research, Braunschweig, Germany. jsa05@helmholtz-hzi.de
Manuel Ferrer
Heinrich Lünsdorf
Victor Wray
Rainer Kalscheuer
Alexander Steinbüchel
Kenneth N Timmis
Peter N Golyshin
Helmholtz Centre for Infection Research · DEUniversity of Münster · DEInstituto de Catálisis y Petroleoquímica · ESTechnische Universität Braunschweig · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel mutant of the marine oil-degrading bacterium Alcanivorax borkumensis SK2, containing a mini-Tn5 transposon disrupting a "tesB-like" acyl-coenzyme A (CoA) thioesterase gene, was found to hyperproduce polyhydroxyalkanoates (PHA), resulting in the extracellular deposition of this biotechnologically important polymer when grown on alkanes. The tesB-like gene encodes a distinct novel enzyme activity, which acts exclusively on hydroxylated acyl-CoAs and thus represents a hydroxyacyl-CoA-specific thioesterase. Inactivation of this enzyme results in the rechanneling of CoA-activated hydroxylated fatty acids, the cellular intermediates of alkane degradation, towards PHA production. These findings may open up new avenues for the development of simplified biotechnological processes for the production of PHA as a raw material for the production of bioplastics.

Indexed as

MutationAcyl Coenzyme AAlkanesBiotechnologyCulture MediaDNA Transposable ElementsEscherichia coliGammaproteobacteriaMicroscopy, Electron, ScanningPolyestersSubstrate SpecificityThiolester HydrolasesUp-RegulationAcyl Coenzyme AAlkanesCulture MediaDNA Transposable ElementsoctadecanePolyestersThiolester Hydrolases

Identifiers

PMID16997960
PMCPMC1698222
OpenAlexW2139268458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.