Evidence map›Paper›PMID 16996591›Full record

ArticleMolecular immunology2007

Initiation of V(D)J recombination in zebrafish (Danio rerio) ovaries.

Hanbing Zhong, Zhi Li, Shuo Lin, Yung Chang

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Expression of immunoglobulin gene with classical V-(D)-J rearrangement in mouse testis and epididymis.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Hanbing ZhongCenter of Developmental Biology and Genetics, College of Life Sciences, Peking University, Beijing 100871, PR China.
Zhi Li
Shuo Lin
Yung Chang
Arizona State University · USPeking University · CN

Funding

GENETIC ANALYSIS OF HEMATOPOIETIC DEVELOPMENTR01DK054508 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LIN, SHUO · 1998 to 2012
$3.4M
Effect of VDJ Recombination on Scid B Cell DevelopmentR01CA073857 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CHANG, YUNG · 2003 to 2007
$1.6M
VIRUS-HOST INTERACTION IN AN ANIMAL MODEL OF HCV INFECTIONZ01DK054508 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI REHERMANN, BARBARA · 1998 to 2008
$607k
VDJ RECOMBINATION EFFECT ON SCID B CELL DEVELOPMENTR29CA073857 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI CHANG, YUNG · 1998 to 2001
$387k
Intramural NIH HHS Z01 DK054508NCI NIH HHS CA073857NCI NIH HHS R01 CA073857NCI NIH HHS R29 CA073857NIDDK NIH HHS R01 DK054508
6 · The paper itself

Abstract

The assembly of mammalian antigen receptor genes is a lymphoid-specific process. However, rearranged immunoglobulin genes can also be recovered from non-lymphoid tissues of cartilaginous fish. This event, known as germline rearrangement, has been speculated to arise from recombination-activating gene (RAG)-mediated recombination in germ cells. In this report, we demonstrate that zebrafish (Danio rerio) oocytes expressing high levels of RAG-RNA can readily initiate recombination cleavage at immunoglobulin gene loci, providing direct evidence for an ongoing process of attempted germline rearrangement in zebrafish ovaries. This attempted rearrangement is largely unproductive, yielding no accumulation of germline-joined immunoglobulin genes in zebrafish, which is consistent with their general absence in this species. Our data, therefore, substantiate the speculation that RAG might have been derived from a transposase, invading germ cells of ancient species, and later become a dedicated recombinase only expressed in developing lymphocytes.

Indexed as

Gene ExpressionAnimalsBase SequenceDNA-Binding ProteinsFemaleGene RearrangementGenes, ImmunoglobulinHomeodomain ProteinsMolecular Sequence DataOvaryRecombination, GeneticRNA, MessengerZebrafishDNA-Binding ProteinsHomeodomain ProteinsRAG-1 proteinRNA, MessengerV(D)J recombination activating protein 2

Identifiers

PMID16996591
PMCPMC1785110
OpenAlexW2046303578

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.