Evidence map›Paper›PMID 16990801›Full record

ArticleThe EMBO journal2006

Smads orchestrate specific histone modifications and chromatin remodeling to activate transcription.

Sarah Ross, Edwin Cheung, Thodoris G Petrakis, Michael Howell, W Lee Kraus, Caroline S Hill

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 158 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The Link Between TGF-β Signaling and Chromatin Dynamics Takes an Unexpected Path.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  5. Article
  6. DNMT1 can induce primary germ layer differentiation through de novo DNA methylation.Genes to cells : devoted to molecular & cellular mechanisms · 2024
    Article
  7. Article
  8. Review
  9. TGF-β signaling in health, disease, and therapeutics.Signal transduction and targeted therapy · 2024
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. TGF-β in developmental and fibrogenic EMTs.Seminars in cancer biology · 2022
    Review
  18. Article
  19. Review
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Sarah RossLaboratory of Developmental Signalling, Cancer Research UK London Research Institute, London, UK.
Edwin Cheung
Thodoris G Petrakis
Michael Howell
W Lee Kraus
Caroline S Hill
Cancer Research UK · GBCornell University · USGenome Institute of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Smads are intracellular transducers for TGF-beta superfamily ligands, but little is known about the mechanism by which complexes of receptor-phosphorylated Smad2 and Smad4 regulate transcription. Using an in vitro transcription system, we have discovered that, unlike most transcription factors that are sufficient to recruit the basal transcription machinery and therefore activate transcription on both naked DNA and chromatin templates, the Smads only activate transcription from chromatin templates. We demonstrate that Smad2-mediated transcription requires the histone acetyltransferase, p300. Smad2-recruited p300 exhibits an altered substrate specificity, specifically acetylating nucleosomal histone H3 at lysines 9 and 18, and these modifications are also detected on an endogenous Smad2-dependent promoter in a ligand-induced manner. Furthermore, we show that endogenous Smad2 interacts with the SWI/SNF ATPase, Brg1, in a TGF-beta-dependent manner, and demonstrate that Brg1 is recruited to Smad2-dependent promoters and is specifically required for TGF-beta-induced expression of endogenous Smad2 target genes. Our data indicate that the Smads define a new class of transcription factors that absolutely require chromatin to assemble the basal transcription machinery and activate transcription.

Indexed as

Chromatin Assembly and DisassemblyTranscriptional ActivationAcetylationAnimalsCells, CulturedChromatinChromosomal Proteins, Non-HistoneHeLa CellsHistonesHumansMiceModels, GeneticNIH 3T3 CellsNuclear Proteinsp300-CBP Transcription FactorsPhosphorylationChromatinChromosomal Proteins, Non-HistoneHistonesNuclear Proteinsp300-CBP Transcription FactorsSmad2 ProteinSmad4 ProteinSWI-SNF-B chromatin-remodeling complexTranscription FactorsTransforming Growth Factor beta

Identifiers

PMID16990801
PMCPMC1589990
OpenAlexW2090842851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.