Evidence map›Paper›PMID 16982680›Full record

ArticleMolecular and cellular biology2006

Binding of AlF-C, an Orc1-binding transcriptional regulator, enhances replicator activity of the rat aldolase B origin.

Hiroyuki Minami, Junko Takahashi, Asami Suto, Yasushi Saitoh, Ken-ichi Tsutsumi

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  9. Programming DNA replication origins and chromosome organization.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010
    Review
  10. Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2010
    Article
  11. Article
  12. Article
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  14. Article
  15. Interaction between HMGA1a and the origin recognition complex creates site-specific replication origins.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Hiroyuki MinamiCryobiosystem Research Center, Iwate University, Ueda, Morioka, Iwate 020-8550, Japan.
Junko Takahashi
Asami Suto
Yasushi Saitoh
Ken-ichi Tsutsumi
Iwate University · JPGraduate School USA · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A region encompassing the rat aldolase B gene (aldB) promoter acts as a chromosomal origin of DNA replication (origin) in rat aldolase B-nonexpressing hepatoma cells. To examine replicator function of the aldB origin, we constructed recombinant mouse cell lines in which the rat aldB origin and the mutant derivatives were inserted into the same position at the mouse chromosome 8 by cre-mediated recombination. Nascent strand abundance assays revealed that the rat origin acts as a replicator at the ectopic mouse locus. Mutation of site C in the rat origin, which binds an Orc1-binding protein AlF-C in vitro, resulted in a significant reduction of the replicator activity in the mouse cells. Chromatin immunoprecipitation (ChIP) assays indicated that the reduction of replicator activity was paralleled with the reduced binding of AlF-C and Orc1, suggesting that sequence-specific binding of AlF-C to the ectopic rat origin leads to enhanced replicator activity in cooperation with Orc1. Involvement of AlF-C in replication in vivo was further examined for the aldB origin at its original rat locus and for a different rat origin identified in the present study, which contained an AlF-C-binding site. ChIP assays revealed that both replication origins bind AlF-C and Orc1. We think that the results presented here may represent one mode of origin recognition in mammalian cells.

Indexed as

Amino Acid SequenceAnimalsBinding, CompetitiveBinding SitesChromatin ImmunoprecipitationChromosomesCloning, MolecularElectrophoretic Mobility Shift AssayFructose-Bisphosphate AldolaseGlutathione TransferaseIntegrasesL CellsMiceMolecular Sequence DataMutagenesis, InsertionalOrigin Recognition ComplexCre recombinaseFructose-Bisphosphate AldolaseGlutathione TransferaseGTF2A1L protein, humanIntegrasesOrigin Recognition ComplexRecombinant ProteinsTranscription Factors

Identifiers

PMID16982680
PMCPMC1636824
OpenAlexW2124564248

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.