Evidence map›Paper›PMID 16981706›Full record

ArticleBiochemistry2006

Exploring the role of the active site cysteine in human muscle creatine kinase.

Pan-Fen Wang, Allen J Flynn, Mor M Naor, Jan H Jensen, Guanglei Cui, Kenneth M Merz, George L Kenyon, Michael J McLeish

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In one paragraph

Article in Biochemistry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Pan-Fen WangDepartment of Medicinal Chemistry, University of Michigan, 428 Church Street, Ann Arbor, Michigan 48109, USA.
Allen J Flynn
Mor M Naor
Jan H Jensen
Guanglei Cui
Kenneth M Merz
George L Kenyon
Michael J McLeish
University of Florida · USUniversity of Michigan–Ann Arbor · US

Funding

Mettalloenzyme Structure/FunctionR01GM044974 · NIGMS · UNIVERSITY OF FLORIDA · PI MERZ, KENNETH M. · 1997 to 2010
$2.0M
The Bioinorganic Chemistry of Nickel: The UreasesR01GM066859 · NIGMS · UNIVERSITY OF FLORIDA · PI DEUMENS, ERIK · 2003 to 2011
$1.9M
THEORETICAL STUDY--METALLOENZYME STRUCTURE AND FUNCTIONR29GM044974 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI MERZ, KENNETH M · 1991 to 1995
–
NIGMS NIH HHS GM44974NIGMS NIH HHS R01 GM044974NIGMS NIH HHS R01 GM066859
6 · The paper itself

Abstract

All known guanidino kinases contain a conserved cysteine residue that interacts with the non-nucleophilic eta1-nitrogen of the guanidino substrate. Site-directed mutagenesis studies have shown that this cysteine is important, but not essential for activity. In human muscle creatine kinase (HMCK) this residue, Cys283, forms part of a conserved cysteine-proline-serine (CPS) motif and has a pKa about 3 pH units below that of a regular cysteine residue. Here we employ a computational approach to predict the contribution of residues in this motif to the unusually low cysteine pKa. We calculate that hydrogen bonds to the hydroxyl and to the backbone amide of Ser285 would both contribute approximately 1 pH unit, while the presence of Pro284 in the motif lowers the pKa of Cys283 by a further 1.2 pH units. Using UV difference spectroscopy the pKa of the active site cysteine in WT HMCK and in the P284A, S285A, and C283S/S285C mutants was determined experimentally. The pKa values, although consistently about 0.5 pH unit lower, were in broad agreement with those predicted. The effect of each of these mutations on the pH-rate profile was also examined. The results show conclusively that, contrary to a previous report (Wang et al. (2001) Biochemistry 40, 11698-11705), Cys283 is not responsible for the pKa of 5.4 observed in the WT V/K(creatine) pH profile. Finally we use molecular dynamics simulations to demonstrate that, in order to maintain the linear alignment necessary for associative inline transfer of a phosphoryl group, Cys283 needs to be ionized.

Indexed as

Adenosine DiphosphateAnimalsBinding SitesComputer SimulationCreatineCreatine Kinase, MM FormCysteineHumansHydrogen-Ion ConcentrationKineticsModels, MolecularMutant ProteinsPhosphorylationProlineSerineSpectrophotometry, UltravioletAdenosine DiphosphateCreatineCreatine Kinase, MM FormCysteineMutant ProteinsProlineSerine

Identifiers

PMID16981706
PMCPMC2556515
OpenAlexW1970576608

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.