Evidence map›Paper›PMID 16980387›Full record

ArticleGenetics2006

Differential requirement of DNA replication factors for subtelomeric ARS consensus sequence protosilencers in Saccharomyces cerevisiae.

Muhammad Attiq Rehman, Genevieve Fourel, Amit Mathews, Danielle Ramdin, Maria Espinosa, Eric Gilson, Krassimir Yankulov

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Muhammad Attiq RehmanDepartment of Molecular and Cellular Biology, University of Guelph, Ontario, Canada.
Genevieve Fourel
Amit Mathews
Danielle Ramdin
Maria Espinosa
Eric Gilson
Krassimir Yankulov
University of Guelph · CAÉcole Normale Supérieure de Lyon · FRLaboratoire de Biologie et Modélisation de la Cellule · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The establishment of silent chromatin requires passage through S-phase, but not DNA replication per se. Nevertheless, many proteins that affect silencing are bona fide DNA replication factors. It is not clear if mutations in these replication factors affect silencing directly or indirectly via deregulation of S-phase or DNA replication. Consequently, the relationship between DNA replication and silencing remains an issue of debate. Here we analyze the effect of mutations in DNA replication factors (mcm5-461, mcm5-1, orc2-1, orc5-1, cdc45-1, cdc6-1, and cdc7-1) on the silencing of a group of reporter constructs, which contain different combinations of "natural" subtelomeric elements. We show that the mcm5-461, mcm5-1, and orc2-1 mutations affect silencing through subtelomeric ARS consensus sequences (ACS), while cdc6-1 affects silencing independently of ACS. orc5-1, cdc45-1, and cdc7-1 affect silencing through ACS, but also show ACS-independent effects. We also demonstrate that isolated nontelomeric ACS do not recapitulate the same effects when inserted in the telomere. We propose a model that defines the modes of action of MCM5 and CDC6 in silencing.

Indexed as

Consensus SequenceDNA ReplicationGene SilencingTelomereCell Cycle ProteinsDNA-Binding ProteinsNuclear ProteinsOrigin Recognition ComplexProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseCDC45 protein, S cerevisiaeCDC6 protein, S cerevisiaeCDC7 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding ProteinsMCM5 protein, S cerevisiaeNuclear ProteinsORC2 protein, S cerevisiaeORC5 protein, S cerevisiaeOrigin Recognition ComplexProtein Serine-Threonine KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID16980387
PMCPMC1698613
OpenAlexW1973036655

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.