Evidence map›Paper›PMID 16980355›Full record

ArticleBiophysical journal2006

K+ conduction in the selectivity filter of potassium channels is monitored by the charge distribution along their sequence.

Werner Treptow, Mounir Tarek

Abstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Self-Optimized Biological Channels in Facilitating the Transmembrane Movement of Charged Molecules.Journal of biophysics (Hindawi Publishing Corporation : Online) · 2016
    Article
  6. Energetics of Multi-Ion Conduction Pathways in Potassium Ion Channels.Journal of chemical theory and computation · 2013
    Article
  7. Pore waters regulate ion permeation in a calcium release-activated calcium channel.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  8. Detailed Examination of a Single Conduction Event in a Potassium Channel.The journal of physical chemistry letters · 2013
    Article
  9. Article
  10. Review
  11. Computer Simulations of Voltage-Gated Cation Channels.The journal of physical chemistry letters · 2012
    Article
  12. Article
  13. Article
  14. Counting ion and water molecules in a streaming file through the open-filter structure of the K channel.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2011
    Article
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Werner TreptowUMR Structure et Réactivité des Systèmes Moléculaires Complexes, Nancy-University, Centre National de la Recherche Scientifique, Nancy, France.
Mounir Tarek

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potassium channels display a high conservation of sequence of the selectivity filter (SF), yet nature has designed a variety of channels that present a wide range of absolute rates of K(+) permeation. In KcsA, the structural archetype for K channels, under physiological concentrations, two K(+) ions reside in the SF in configurations 1,3 (up state) and 2,4 (down state) and ion conduction is believed to follow a throughput cycle involving a transition between these states. Using free-energy calculations of KcsA, Kv1.2, and mutant channels, we show that this transition is characterized by a channel-dependent energy barrier. This barrier is strongly influenced by the charges partitioned along the sequence of each channel. These results unveil therefore how, for similar structures of the SF, the rate of K(+) turnover may be fine-tuned within the family of potassium channels.

Indexed as

Ion Channel GatingModels, ChemicalModels, MolecularAmino Acid SequenceComputer SimulationDiffusionMotionPotassiumPotassium ChannelsStatic ElectricityPotassiumPotassium Channels

Identifiers

PMID16980355
PMCPMC1630468

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.