Evidence map›Paper›PMID 16979660›Full record

ArticleJournal of molecular biology2006

Structural basis of interaction between urokinase-type plasminogen activator and its receptor.

Cyril Barinka, Graham Parry, Jennifer Callahan, David E Shaw, Alice Kuo, Khalil Bdeir, Douglas B Cines, Andrew Mazar, Jacek Lubkowski

Abstract read
In one paragraph

Article in Journal of molecular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 114 citations in OpenAlex.

  1. Crystal structure of coagulation factor XII N-terminal domains 1-5.Acta crystallographica. Section D, Structural biology · 2025
    Article
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  3. The Association ofInternational journal of molecular sciences · 2022
    Article
  4. Review
  5. Article
  6. Review
  7. suPAR to Risk-Stratify Patients With Malaria.Frontiers in immunology · 2022
    Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Cyril BarinkaCenter for Cancer Research, National Cancer Institute, Frederick, MD 21702, USA.
Graham Parry
Jennifer Callahan
David E Shaw
Alice Kuo
Khalil Bdeir
Douglas B Cines
Andrew Mazar
Jacek Lubkowski
University of Pennsylvania · USCenter for Cancer Research · USD. E. Shaw Research · US

Funding

Urokinase, Defensin and Acute Lung InjuryP01HL076406 · NHLBI · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI IDELL, STEVEN · 2005 to 2009
$7.7M
KININOGEN/UROKINASE RECEPTORS IN TUMOR ANGIOGENESISR01CA083121 · NCI · TEMPLE UNIV OF THE COMMONWEALTH · PI COLMAN, ROBERT W · 1999 to 2008
$3.0M
Urokinase, Neutrophil Activation and Acute Lung Injury.R01HL076206 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI LIU, GANG · 2005 to 2013
$2.8M
STRUCTURE/FUNCTION ANALYSIS OF THE UROKINASE RECEPTORR01HL060169 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CINES, DOUGLAS BROCK · 1999 to 2002
$852k
Studies of Proteins with Important Roles in Immunology andor Cancer BiologyZ01BC010761 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LUBKOWSKI, JACEK T · 2006 to 2008
$405k
Intramural NIH HHS Z01 BC010761NCI NIH HHS CA83121NCI NIH HHS R01 CA083121NHLBI NIH HHS HL076206NHLBI NIH HHS HL60169NHLBI NIH HHS HL76406NHLBI NIH HHS P01 HL076406NHLBI NIH HHS R01 HL060169NHLBI NIH HHS R01 HL076206
6 · The paper itself

Abstract

Recent studies indicate that binding of the urokinase-type plasminogen activator (uPA) to its high-affinity receptor (uPAR) orchestrates uPAR interactions with other cellular components that play a pivotal role in diverse (patho-)physiological processes, including wound healing, angiogenesis, inflammation, and cancer metastasis. However, notwithstanding the wealth of biochemical data available describing the activities of uPAR, little is known about the exact mode of uPAR/uPA interactions or the presumed conformational changes that accompany uPA/uPAR engagement. Here, we report the crystal structure of soluble urokinase plasminogen activator receptor (suPAR), which contains the three domains of the wild-type receptor but lacks the cell-surface anchoring sequence, in complex with the amino-terminal fragment of urokinase-type plasminogen activator (ATF), at the resolution of 2.8 A. We report the 1.9 A crystal structure of free ATF. Our results provide a structural basis, represented by conformational changes induced in uPAR, for several published biochemical observations describing the nature of uPAR/uPA interactions and provide insight into mechanisms that may be responsible for the cellular responses induced by uPA binding.

Indexed as

Protein Structure, SecondaryProtein Structure, TertiaryAnimalsBinding SitesCrystallography, X-RayHumansModels, MolecularMolecular Sequence DataPeptide FragmentsReceptors, Cell SurfaceReceptors, Urokinase Plasminogen ActivatorRecombinant ProteinsUrokinase-Type Plasminogen ActivatorPeptide FragmentsPLAUR protein, humanReceptors, Cell SurfaceReceptors, Urokinase Plasminogen ActivatorRecombinant ProteinsUrokinase-Type Plasminogen Activator

Identifiers

PMID16979660
PMCPMC3443620
OpenAlexW2064283575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.