Evidence map›Paper›PMID 16973899›Full record

ArticleNucleic acids research2006

A novel archaeal regulatory protein, Sta1, activates transcription from viral promoters.

Alexandra Kessler, Guennadi Sezonov, J Iñaki Guijarro, Nicole Desnoues, Thierry Rose, Muriel Delepierre, Stephen D Bell, David Prangishvili

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Structure and mechanisms of viral transcription factors in archaea.Extremophiles : life under extreme conditions · 2017
    Review
  10. Article
  11. Review
  12. Archaeal extrachromosomal genetic elements.Microbiology and molecular biology reviews : MMBR · 2015
    Review
  13. Article
  14. Host and viral transcriptional regulators in Sulfolobus: an overview.Extremophiles : life under extreme conditions · 2013
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Alexandra KesslerUnité de Biologie Moléculaire du Gène chez les Extrêmophiles, Institut Pasteur, 25-28 rue du Dr Roux, 75724 Paris Cedex 15, France.
Guennadi Sezonov
J Iñaki Guijarro
Nicole Desnoues
Thierry Rose
Muriel Delepierre
Stephen D Bell
David Prangishvili
Institut Pasteur · FRBiology of Extremophiles Laboratory · FRCentre National de la Recherche Scientifique · FRMRC Cancer Unit · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While studying gene expression of the rudivirus SIRV1 in cells of its host, the hyperthermophilic crenarchaeon Sulfolobus, a novel archaeal transcriptional regulator was isolated. The 14 kDa protein, termed Sulfolobus transcription activator 1, Sta1, is encoded on the host chromosome. Its activating effect on transcription initiation from viral promoters was demonstrated in in vitro transcription experiments using a reconstituted host system containing the RNA polymerase, TATA-binding protein (TBP) and transcription factor B (TFB). Most pronounced activation was observed at low concentrations of either of the two transcription factors, TBP or TFB. Sta1 was able to bind viral promoters independently of any component of the host pre-initiation complex. Two binding sites were revealed by footprinting, one located in the core promoter region and the second approximately 30 bp upstream of it. Comparative modeling, NMR and circular dichroism of Sta1 indicated that the protein contained a winged helix-turn-helix motif, most probably involved in DNA binding. This strategy of the archaeal virus to co-opt a host cell regulator to promote transcription of its genes resembles eukaryal virus-host relationships.

Indexed as

Gene Expression Regulation, ViralTranscriptional ActivationAmino Acid SequenceArchaeal ProteinsBinding SitesDNA-Binding ProteinsMolecular Sequence DataPromoter Regions, GeneticRudiviridaeSequence AlignmentSulfolobusTrans-ActivatorsArchaeal ProteinsDNA-Binding ProteinsTrans-Activators

Identifiers

PMID16973899
PMCPMC1635249
OpenAlexW2032009114

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.