Evidence map›Paper›PMID 16973547›Full record

ArticleJournal of virology2006

Tissue-specific splicing of the herpes simplex virus type 1 latency-associated transcript (LAT) intron in LAT transgenic mice.

Anne M Gussow, Nicole V Giordani, Robert K Tran, Yumi Imai, Dacia L Kwiatkowski, Glenn F Rall, Todd P Margolis, David C Bloom

Abstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Anne M GussowDepartment of Molecular Genetics and Microbiology, Box 100266, University of Florida College of Medicine, Gainesville, FL 32610-0266, USA.
Nicole V Giordani
Robert K Tran
Yumi Imai
Dacia L Kwiatkowski
Glenn F Rall
Todd P Margolis
David C Bloom
University of Florida · USFlorida College · USFoundation University Islamabad · PKFox Chase Cancer Center · US

Funding

Rapid-Prototyping and Design CoreP30EY002162 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAKKARAJU, APARNA · 1985 to 2024
$16.8M
Molecular Genetics of HSV ReactivationR01AI048633 · NIAID · UNIVERSITY OF FLORIDA · PI BLOOM, DAVID C. · 2001 to 2023
$7.2M
BASIC MICROBIOLOGY &INFECTIOUS DISEASEST32AI007110 · NIAID · UNIVERSITY OF FLORIDA · PI Stephanie M Karst · 1985 to 2026
$4.3M
Pathogenesis of Neurotropic RNA Virus InfectionsR01NS040500 · NINDS · RESEARCH INST OF FOX CHASE CAN CTR · PI RALL, GLENN F · 2002 to 2006
$1.6M
OCULAR INFECTION WITH THE HERPESVIRUSESR01EY010008 · NEI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI MARGOLIS, TODD P. · 1994 to 2003
$1.4M
NEI NIH HHS EY02162NEI NIH HHS EY10008NEI NIH HHS P30 EY002162NEI NIH HHS R01 EY010008NIAID NIH HHS AI07110NIAID NIH HHS AI48633NIAID NIH HHS R01 AI048633NIAID NIH HHS T32 AI007110NINDS NIH HHS NS40500NINDS NIH HHS R01 NS040500
6 · The paper itself

Abstract

To study the regulation of herpes simplex virus type 1 (HSV-1) latency-associated transcript (LAT) expression and processing in the absence of other cis and trans viral functions, a transgenic mouse containing the region encompassing the LAT promoter (LAP1) and the LAT 5' exon through the 2.0-kb intron was created. LAT expression was detectable by reverse transcriptase PCR (RT-PCR) in a number of tissues, including the dorsal root ganglia (DRG), trigeminal ganglia (TG), brain, skin, liver, and kidney. However, when the accumulation of the 2.0-kb LAT intron was analyzed at the cellular level by in situ hybridization, little or no detectable accumulation was observed in the brain, spinal cord, kidney, or foot, although the 2.0-kb LAT intron was detected at high levels (over 90% of neurons) in the DRG and TG. Northern blot analysis detected the stable 2.0-kb LAT intron only in the sensory ganglia. When relative amounts of the spliced and unspliced LAT within the brain, liver, kidney, spinal cord, TG, and DRG were analyzed by real-time RT-PCR, splicing of the 2.0-kb LAT intron was significantly more efficient in the sensory ganglia than in other tissues. Finally, infection of both transgenic mice and nontransgenic littermates with HSV-1 revealed no differences in lytic replication, establishment of latency, or reactivation, suggesting that expression of the LAT transgene in trans has no significant effect on those functions. Taken together, these data indicate that the regulation of expression and processing of LAT RNA within the mouse is highly cell-type specific and occurs in the absence of other viral cis- and trans-acting factors.

Indexed as

Acute DiseaseAgingAnimalsExonsGanglia, SensoryHerpes SimplexHerpesvirus 1, HumanIntronsMiceMice, Inbred C3HMice, TransgenicNeuronsOrgan SpecificityPromoter Regions, GeneticRNA SplicingTranscription, Genetic

Identifiers

PMID16973547
PMCPMC1617271
OpenAlexW2016702074

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.