Evidence map›Paper›PMID 16973543›Full record

ArticleJournal of virology2006

Optimization of feline immunodeficiency virus vectors for RNA interference.

Scott Q Harper, Patrick D Staber, Christine R Beck, Sarah K Fineberg, Colleen Stein, Dalyz Ochoa, Beverly L Davidson

Abstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. αeLife · 2023
    Article
  2. Recent advances in RNA interference therapeutics for CNS diseases.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2013
    Review
  3. Article
  4. Article
  5. RNA interference improves myopathic phenotypes in mice over-expressing FSHD region gene 1 (FRG1).Molecular therapy : the journal of the American Society of Gene Therapy · 2011
    Article
  6. Review
  7. Article
  8. Human gene therapy vectors derived from feline lentiviruses.Veterinary immunology and immunopathology · 2008
    Review
  9. Article
  10. Connecdenn, a novel DENN domain-containing protein of neuronal clathrin-coated vesicles functioning in synaptic vesicle endocytosis.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Scott Q HarperProgram in Gene Therapy, University of Iowa, Iowa City, IA 52242, USA.
Patrick D Staber
Christine R Beck
Sarah K Fineberg
Colleen Stein
Dalyz Ochoa
Beverly L Davidson

Funding

Vector Core-Core 2P30DK054759 · NIDDK · UNIVERSITY OF IOWA · PI Alejandro Antonio Pezzulo · 1998 to 2026
$30.5M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Gene therapy for dominant neurodegenerative diseasesR01HD044093 · NICHD · UNIVERSITY OF IOWA · PI DAVIDSON, BEVERLY L · 2002 to 2006
$1.1M
EFFECTS OF HES6 PROTEOLYSIS ON DIFFERENTITATIONF32NS047048 · NINDS · UNIVERSITY OF IOWA · PI HARPER, SCOTT Q · 2003 to 2005
$139k
NICHD NIH HHS HD 44093NICHD NIH HHS R01 HD044093NIDDK NIH HHS DK54759NIDDK NIH HHS P30 DK054759NIGMS NIH HHS T32 GM007337NINDS NIH HHS F32 NS047048NINDS NIH HHS NS 047048
6 · The paper itself

Abstract

RNA interference (RNAi) occurs naturally in plant and animal cells as a means for modulating gene expression. This process has been experimentally manipulated to achieve targeted gene silencing in cells, tissues, and animals, using a variety of vector systems. Here, we tested the hypothesis that vectors based on feline immunodeficiency virus (FIV) could be used for coexpression of reporter constructs and RNAi expression cassettes. We found, unexpectedly, in our initial constructs that placement of RNAi expression cassettes downstream from a polymerase II (pol II)-expressed reporter gene inhibited reporter expression but not vector titer. Through a series of intermediate vector constructs, we found that placement of the RNAi expression cassette relative to the Rev response element and the pol II expression cassette was critical for efficient RNAi and reporter gene expression. These results suggested that steric factors, including RNA structure and recruitment of competing transcriptional machinery, may affect gene expression from FIV vectors. In a second series of studies, we show that target sequence silencing can be achieved in cells transduced by FIV vectors coexpressing reporter genes and 3' untranslated region resident microRNAs. The optimized FIV-based RNAi expression vectors will find broad use given the extensive tropism of pseudotyped FIV vectors for many cell types in vitro and in vivo.

Indexed as

RNA InterferenceCell Line, TumorCloning, MolecularGene ExpressionGenes, ReporterGenetic VectorsGenome, ViralHumansImmunodeficiency Virus, FelineMicroRNAsPromoter Regions, GeneticMicroRNAs

Identifiers

PMID16973543
PMCPMC1617215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.