Evidence map›Paper›PMID 16971443›Full record

ArticleJournal of virology2006

Multivalent sequence recognition by Epstein-Barr virus Zta requires cysteine 171 and an extension of the canonical B-ZIP domain.

Pu Wang, Latasha Day, Paul M Lieberman

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Pu WangThe Wistar Institute, 3601 Spruce St., Philadelphia, Pennsylvania 19104-4268, USA.
Latasha Day
Paul M Lieberman
The Wistar Institute · US

Funding

Functions of the General Coactivator TFIIAR01GM054687 · NIGMS · WISTAR INSTITUTE · PI LIEBERMAN, PAUL M. · 1996 to 2005
$1.5M
NCI NIH HHS CA86678NIGMS NIH HHS GM 54687NIGMS NIH HHS R01 GM054687
6 · The paper itself

Abstract

Epstein-Barr virus (EBV) immediate-early protein Zta is a member of the basic-leucine zipper (B-ZIP) family of DNA binding proteins that has an unusual capacity to recognize multiple DNA recognition sites, including AP-1 and C/EBP binding sites. To better understand the structure and function of Zta, we have mutagenized cysteine residues within or adjacent to the B-ZIP domain. We found that serine substitution for cysteine 171 (C171S), which lies outside and amino terminal to the B-ZIP basic region, completely abrogates Zta capacity to initiate lytic cycle replication. C171S disrupted Zta transcription activation function of several EBV lytic cycle promoters, including the BMRF1 gene (EA-D) and the other lytic activator, Rta. Overexpression of Rta could not rescue the C171S defect for transcription reactivation or viral DNA replication. Zta C171S was defective for binding to these promoters in vivo, as measured by chromatin immunoprecipitation assay. Purified Zta C171S bound AP-1 sites similar to wild-type Zta, but it was incapable of binding several degenerate Zta sites, including a consensus C/EBP site. Zta truncation mutations reveal that residues N terminal to the B-ZIP (amino acids 156 to 178) confer C/EBP binding capacity to the otherwise AP-1-restricted DNA recognition function. Comparison among viral orthologues of Zta suggest that a conserved N-terminal extension of the consensus B-ZIP domain is required for this multivalent DNA recognition capacity of Zta and is essential for viral reactivation.

Indexed as

Amino Acid SubstitutionChromatin ImmunoprecipitationCysteineDNA-Binding ProteinsDNA, ViralGenes, ReporterHerpesvirus 4, HumanLuciferasesMutagenesis, Site-DirectedMutation, MissenseProtein BindingProtein Structure, TertiaryRNA, MessengerRNA, ViralTrans-ActivatorsTranscription, GeneticBZLF1 protein, Herpesvirus 4, HumanCysteineDNA-Binding ProteinsDNA, ViralLuciferasesRNA, MessengerRNA, ViralTrans-ActivatorsViral Proteins

Identifiers

PMID16971443
PMCPMC1642168
OpenAlexW2097141103

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.