Evidence map›Paper›PMID 16971431›Full record

ArticleJournal of virology2006

Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products.

Patricia Renesto, Chantal Abergel, Philippe Decloquement, Danielle Moinier, Saïd Azza, Hiroyuki Ogata, Patrick Fourquet, Jean-Pierre Gorvel, Jean-Michel Claverie

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
10.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 124 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Frontiers in microbiology · 2023
    Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Giant viruses of themicroLife · 2022
    Article
  10. Article
  11. Article
  12. Yaravirus: A novel 80-nm virus infectingProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. Structural and Proteomic Studies of theFrontiers in microbiology · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. On the occurrence of cytochrome P450 in viruses.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Kinetics of Mimivirus Infection Stages Quantified Using Image Flow Cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2019
    Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Patricia RenestoUnité des Rickettsies, CNRS UMR 6020, IFR-48, Faculté de Médecine, 27 Boulevard Jean Moulin, 13385 Marseille, France. patricia.renesto@medecine.univ-mrs.fr
Chantal Abergel
Philippe Decloquement
Danielle Moinier
Saïd Azza
Hiroyuki Ogata
Patrick Fourquet
Jean-Pierre Gorvel
Jean-Michel Claverie
Centre National de la Recherche Scientifique · FRCentre d’Immunologie de Marseille-Luminy · FRInstitut de Biologie Structurale · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acanthamoeba polyphaga mimivirus is the largest known virus in both particle size and genome complexity. Its 1.2-Mb genome encodes 911 proteins, among which only 298 have predicted functions. The composition of purified isolated virions was analyzed by using a combined electrophoresis/mass spectrometry approach allowing the identification of 114 proteins. Besides the expected major structural components, the viral particle packages 12 proteins unambiguously associated with transcriptional machinery, 3 proteins associated with DNA repair, and 2 topoisomerases. Other main functional categories represented in the virion include oxidative pathways and protein modification. More than half of the identified virion-associated proteins correspond to anonymous genes of unknown function, including 45 "ORFans." As demonstrated by both Western blotting and immunogold staining, some of these "ORFans," which lack any convincing similarity in the sequence databases, are endowed with antigenic properties. Thus, anonymous and unique genes constituting the majority of the mimivirus gene complement encode bona fide proteins that are likely to participate in well-integrated processes.

Indexed as

Genome, ViralProteomeAcanthamoebaAnimalsDNA, ViralDNA VirusesOpen Reading FramesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationViral ProteinsVirionDNA, ViralProteomeViral Proteins

Identifiers

PMID16971431
PMCPMC1642625
OpenAlexW2148501881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.