Evidence map›Paper›PMID 16969363›Full record

ArticleThe pharmacogenomics journal2007

Use of pairwise marker combination and recursive partitioning in a pharmacogenetic genome-wide scan.

L L Warren, A R Hughes, E H Lai, D V Zaykin, S A Haneline, A T Bansal, A W Wooster, W R Spreen, J E Hernandez, T R Scott and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in The pharmacogenomics journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Role of Pharmacovigilance in India: An overview.Online journal of public health informatics · 2015
    Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

L L WarrenGlaxoSmithKline, RTP, NC 27709, USA.
A R Hughes
E H Lai
D V Zaykin
S A Haneline
A T Bansal
A W Wooster
W R Spreen
J E Hernandez
T R Scott
A D Roses
M Mosteller
CNA30027 and CNA30032 study teams
GlaxoSmithKline (United States) · USGlaxoSmithKline (United Kingdom) · GBNational Institute of Environmental Health Sciences · US

Funding

Statistical, population genetics and genetic epidemiologyZIAES101866 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ZAYKIN, DMITRI V · 2009 to 2021
$5.8M
Statistical, population genetics and genetic epidemiologyZ01ES101866 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ZAYKIN, DMITRI V · 2005 to 2008
$911k
Intramural NIH HHS
6 · The paper itself

Abstract

The objective of pharmacogenetic research is to identify a genetic marker, or a set of genetic markers, that can predict how a given person will respond to a given medicine. To search for such marker combinations that are predictive of adverse drug events, we have developed and applied two complementary methods to a pharmacogenetic study of the hypersensitivity reaction (HSR) associated with treatment with abacavir, a medicine that is used to treat HIV-infected patients. Our results show that both of these methods can be used to uncover potentially useful predictive marker combinations. The pairwise marker combination method yielded a collection of marker pairs that featured a spectrum of sensitivities and specificities. Recursive partitioning results led to the genetic delineation of multiple risk categories, including those with extremely high and extremely low risk of HSR. These methods can be readily applied in pharmacogenetic candidate gene studies as well as in genome-wide scans.

Indexed as

Genetic MarkersPharmacogeneticsAdultCase-Control StudiesFemaleGenome, HumanHLA-B AntigensHumansMaleRetrospective StudiesSensitivity and SpecificityGenetic MarkersHLA-B*57:01 antigenHLA-B Antigens

Identifiers

PMID16969363
OpenAlexW1992436719

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.