Evidence map›Paper›PMID 16968137›Full record

ArticlePLoS biology2006

Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors.

Margaret Roth Woodhouse, Michael Freeling, Damon Lisch

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Frontiers in plant science · 2026
    Article
  3. Article
  4. Structure and RNA template requirements ofProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Article
  6. TheProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Silencing ofGenetics · 2020
    Article
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  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Margaret Roth WoodhouseDepartment of Plant and Microbial Biology, University of California Berkeley, Berkeley, California, USA.
Michael Freeling
Damon Lisch
University of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Paramutation and transposon silencing are two epigenetic phenomena that have intrigued and puzzled geneticists for decades. Each involves heritable changes in gene activity without changes in DNA sequence. Here we report the cloning of a gene whose activity is required for the maintenance of both silenced transposons and paramutated color genes in maize. We show that this gene, Mop1 (Mediator of paramutation1) codes for a putative RNA-dependent RNA polymerase, whose activity is required for the production of small RNAs that correspond to the MuDR transposon sequence. We also demonstrate that although Mop1 is required to maintain MuDR methylation and silencing, it is not required for the initiation of heritable silencing. In contrast, we present evidence that a reduction in the transcript level of a maize homolog of the nucleosome assembly protein 1 histone chaperone can reduce the heritability of MuDR silencing. Together, these data suggest that the establishment and maintenance of MuDR silencing have distinct requirements.

Indexed as

DNA Transposable ElementsGenes, PlantAllelesCloning, MolecularGene Expression Regulation, PlantGene SilencingHomozygoteMolecular Sequence DataMutationPhylogenyRNARNA, MessengerTranscription, GeneticTransgenesZea maysDNA Transposable ElementsRNARNA, Messenger

Identifiers

PMID16968137
PMCPMC1563492
OpenAlexW2016047720

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.