Evidence map›Paper›PMID 16964289›Full record

ArticleOncogene2007

Identification of a new class of PAX3-FKHR target promoters: a role of the Pax3 paired box DNA binding domain.

L Zhang, C Wang

Open access · greenAbstract read
In one paragraph

Article in Oncogene, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  8. PROX1 transcription factor controls rhabdomyosarcoma growth, stemness, myogenic properties and therapeutic targets.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

L ZhangCenter for Molecular Biology of Oral Diseases, University of Illinois at Chicago, Chicago, IL 60612, USA.
C Wang
University of Illinois Chicago · US

Funding

Basis of PAX3-FKHR oncogenesis in rhabdomyosarcomaR01CA074907 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI WANG, CHIAYENG · 2002 to 2011
$2.7M
BASIS OF PAX3-FKHR ONCOGENESIS IN RHABDOMYOSARCOMAR29CA074907 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI WANG, CHIAYENG · 1997 to 2001
$242k
NCI NIH HHS CA074907NCI NIH HHS R01 CA074907NCI NIH HHS R29 CA074907
6 · The paper itself

Abstract

Alveolar rhabdomyosarcoma (aRMS), an aggressive skeletal muscle cancer, carries a unique t(2;13) chromosomal translocation resulting in the formation of a chimeric transcription factor PAX3-FKHR. This fusion protein contains the intact DNA-binding domains (PD: paired box binding domain; HD: paired-type homeodomain) of Pax3 fused to the activation domain of FKHR. Cells expressing Pax3 and PAX3-FKHR show vastly different gene expression patterns, despite that they share the same DNA-binding domains. We present evidence of a gain of function mechanism that allows the fusion protein to recognize and transcriptionally activate response elements containing a PD-specific binding site. This DNA recognition specificity is in contrast to the requirement for Pax3-specific target sequences that must contain a composite of PD-and HD-binding sites. Domain swapping studies suggest that an increased structural flexibility could account for the relaxed DNA targeting specificity in PAX3-FKHR. Here, we identify myogenin gene as a direct target of PD-dependent PAX3-FKHR activation pathway in vitro and in vivo. We demonstrate that PAX3-FKHR could induce myogenin expression in undifferentiated myoblasts by a MyoD independent pathway, and that PAX3-FKHR is directly involved in myogenin expression in aRMS cells.

Indexed as

Promoter Regions, GeneticAnimalsChromatin ImmunoprecipitationDNAElectrophoretic Mobility Shift AssayForkhead Box Protein O1Forkhead Transcription FactorsHeLa CellsHumansMiceMyogeninNIH 3T3 CellsPaired Box Transcription FactorsPAX3 Transcription FactorTranscription, GeneticDNAForkhead Box Protein O1Forkhead Transcription FactorsFOXO1 protein, humanMyogeninPaired Box Transcription FactorsPAX3 protein, humanPAX3 Transcription Factor

Identifiers

PMID16964289
PMCPMC2238811
OpenAlexW2059515337

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.