Evidence map›Paper›PMID 16963777›Full record

ArticleNucleic acids research2006

Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae.

Cathryn Rehmeyer, Weixi Li, Motoaki Kusaba, Yun-Sik Kim, Doug Brown, Chuck Staben, Ralph Dean, Mark Farman

Abstract read
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
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  9. Review
  10. Virulence Pattern ofTropical life sciences research · 2021
    Article
  11. Article
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  13. Article
  14. Article
  15. Article
  16. Article
  17. Novel Variation and Evolution ofFrontiers in genetics · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Cathryn RehmeyerDepartment of Plant Pathology, University of Kentucky, Lexington, KY 40546 USA.
Weixi Li
Motoaki Kusaba
Yun-Sik Kim
Doug Brown
Chuck Staben
Ralph Dean
Mark Farman

Funding

ZEBRAFISH VISUAL FUNCTION RECOVERY FOLLOWING OPTIC NERVE DAMAGEP20RR016481 · NCRR · UNIVERSITY OF LOUISVILLE · PI BARTON, HAZEL A · 2001 to 2011
$34.8M
NCRR NIH HHS 5P20RR016481-03NCRR NIH HHS P20 RR016481
6 · The paper itself

Abstract

Eukaryotic pathogens of humans often evade the immune system by switching the expression of surface proteins encoded by subtelomeric gene families. To determine if plant pathogenic fungi use a similar mechanism to avoid host defenses, we sequenced the 14 chromosome ends of the rice blast pathogen, Magnaporthe oryzae. One telomere is directly joined to ribosomal RNA-encoding genes, at the end of the approximately 2 Mb rDNA array. Two are attached to chromosome-unique sequences, and the remainder adjoin a distinct subtelomere region, consisting of a telomere-linked RecQ-helicase (TLH) gene flanked by several blocks of tandem repeats. Unlike other microbes, M.oryzae exhibits very little gene amplification in the subtelomere regions-out of 261 predicted genes found within 100 kb of the telomeres, only four were present at more than one chromosome end. Therefore, it seems unlikely that M.oryzae uses switching mechanisms to evade host defenses. Instead, the M.oryzae telomeres have undergone frequent terminal truncation, and there is evidence of extensive ectopic recombination among transposons in these regions. We propose that the M.oryzae chromosome termini play more subtle roles in host adaptation by promoting the loss of terminally-positioned genes that tend to trigger host defenses.

Indexed as

Adenosine TriphosphatasesBase SequenceChromosomes, FungalDNA HelicasesDNA Transposable ElementsFungal ProteinsGene DuplicationGenes, FungalMagnaportheMolecular Sequence DataOryzaRecQ HelicasesSequence Analysis, DNATelomereTerminology as TopicAdenosine TriphosphatasesDNA HelicasesDNA Transposable ElementsFungal ProteinsRecQ Helicases

Identifiers

PMID16963777
PMCPMC1635262

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.