Evidence map›Paper›PMID 16963637›Full record

ArticleEukaryotic cell2006

Evidence for novel pH-dependent regulation of Candida albicans Rim101, a direct transcriptional repressor of the cell wall beta-glycosidase Phr2.

Yong-Un Baek, Samuel J Martin, Dana A Davis

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 63 citations in OpenAlex.

  1. Serpin 4/5 ofMicroorganisms · 2026
    Article
  2. Article
  3. Article
  4. Transcriptional expression ofMicrobiology spectrum · 2024
    Article
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  9. PeerJ · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yong-Un BaekDepartment of Microbiology, University of Minnesota, 420 Delaware St., Minneapolis, 55455, USA.
Samuel J Martin
Dana A Davis
University of Minnesota · US

Funding

Role of Rim 101 in response to alkaline pH and virulenceR01AI064054 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DAVIS, DANA A · 2005 to 2009
$1.7M
NIAID NIH HHS 1R01-AI064054-01NIAID NIH HHS R01 AI064054
6 · The paper itself

Abstract

Candida albicans is a commensal fungus of mucosal surfaces that can cause disease in susceptible hosts. One aspect of the success of C. albicans as both a commensal and a pathogen is its ability to adapt to diverse environmental conditions, including dramatic variations in environmental pH. The response to a neutral-to-alkaline pH change is controlled by the Rim101 signal transduction pathway. In neutral-to-alkaline environments, the zinc finger transcription factor Rim101 is activated by the proteolytic removal of an inhibitory C-terminal domain. Upon activation, Rim101 acts to induce alkaline response gene expression and repress acidic response gene expression. Previously, recombinant Rim101 was shown to directly bind to the alkaline-pH-induced gene PHR1. Here, we demonstrate that endogenous Rim101 also directly binds to the alkaline-pH-repressed gene PHR2. Furthermore, we find that of the three putative binding sites, only the -124 site and, to a lesser extent, the -51 site play a role in vivo. In C. albicans, the predicted Rim101 binding site was thought to be CCAAGAA, divergent from the GCCAAG site defined in Aspergillus nidulans and Saccharomyces cerevisiae. Our results suggest that the Rim101 binding site in C. albicans is GCCAAGAA, but slight variations are tolerated in a context-dependent fashion. Finally, our data suggest that Rim101 activity is governed not only by proteolytic processing but also by an additional mechanism not previously described.

Indexed as

Binding, CompetitiveBinding SitesCandida albicansDNA-Binding ProteinsElectrophoretic Mobility Shift AssayFungal ProteinsHydrogen-Ion ConcentrationMembrane GlycoproteinsMutationPromoter Regions, GeneticProtein BindingProtein Processing, Post-TranslationalDNA-Binding ProteinsFungal ProteinsMembrane GlycoproteinsPHR1 protein, Candida albicansRIM101 protein, Candida albicans

Identifiers

PMID16963637
PMCPMC1563585
OpenAlexW2113958259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.